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Sordaria macrospora wild type and developmental mutant delta-asf1

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Sordaria macrospora

PROVIDER: GSE216634 | GEO | 2023/11/20

REPOSITORIES: GEO

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Similar Datasets

Hi-C analysis of the Sordaria macrospora wild type and developmental mutant delta-asf1 [HiC]

Project description:Chromatin organization of the wild type and delta-asf1 mutant of the filamentous ascomycete Sordaria macrospora was analyzed by Hi-C. The delta-asf1 mutant lacks the conserved histone chaperone ASF1 and is unable to produce sexual fruiting bodies. It was hypothesized that the lack of the histone chaperone ASF1 in the mutant might lead to differences in short- or long-distance interactions of chromatin. Furthermore, it was hypothesized that chromatin organization might change during sexual development in the wild type as a prerequisite for the drastic transcriptome changes during development that were observed in earlier studies.

2023-11-20 | GSE216632 | GEO

ChIP-seq analysis of the Sordaria macrospora wild type and the developmental mutant delta-asf1

Project description:Genome-wide distribtuion of histone H3K56ac (histone H3 acetylated at lysine 56) was analyzed in the wild type and the sterile mutant asf1. The asf1 gene encodes a conserved histone chaperone, and preliminary experimentes indicated changes in histone modifications in the mutant that were analyzed on a genome-wide basis in these experiments.

2023-11-20 | GSE228529 | GEO

ChIP-seq analysis of the Sordaria macrospora wild type and the developmental mutant delta-asf1 [ChIP-seq]

Project description:Genome-wide distribtuion of histone H3 and H3K27me3 (histone H3 tri-methylated at lysine 27) was analyzed in the wild type and the sterile mutant asf1. The asf1 gene encodes a conserved histone chaperone, and preliminary experimentes indicated changes in histone modifications in the mutant that were analyzed on a genome-wide basis in these experiments.

2023-11-20 | GSE216629 | GEO

Bisulfite sequencing of Sordaria macrospora wild type and asf1 mutant

Project description:The aim of this analysis was to analyze DNA methylation in the wild type and the histone chaperone mutant asf1 of the filamentous fungus Sordaria macrospora.

2018-11-26 | GSE114029 | GEO

MNase-seq analysis of wild type and asf1 mutant of Sordaria macrospora

Project description:The aim of this analysis was to analyze nucleosome distribution in the filamentous ascomycete Sordaria macrospora by micrococcal nuclease digestion and sequencing.

2018-11-26 | GSE92461 | GEO

Bisulfite sequencing of Sordaria macrospora wild type and asf1 mutant

Project description:Bisulfite sequencing of Sordaria macrospora wild type and asf1 mutant

| PRJNA454909 | ENA

Whole-Genome Sequencing of Sordaria macrospora Mutants Identifies Developmental Genes.

Project description: Not available

| S-EPMC3284333 | biostudies-literature

Gene expression in developmental mutants of Sordaria macrospora

Project description:The aim of this analysis was to analyze gene expression in developmental mutants of the filamentous ascomycete Sordaria macrospora. RNA was isolated from total mycelia, or young fruiting bodies (protoperithecia) were isolated by laser microdissection and RNA was extracted, amplified and used for RNA-sequencing.

2018-11-26 | GSE92337 | GEO

The transcription factor PRO44 and the histone chaperone ASF1 regulate distinct aspects of multicellular development in the filamentous fungus Sordaria macrospora.

Project description: Not available

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Transcriptome analysis of a Sordaria macrospora nox1 mutant

Project description:The Sordaria macrospora nox1 mutant has a block in sexual development at the stage of protoperithecia formation, and therefore is sterile. The aim of this study was to determine the transcriptome of microdissected protoperithecia from the mutant, as well as the transcriptomes of total RNA from the mutant and the wild type for comparison. The data were then compared with transcriptome data from protoperithecia of the wild type and the developemental mutant pro1; the corresponding data were generated in a previous study (Teichert et al. 2012, BMC Genomics 13: 511, GEO accession GSE33668).

2014-03-10 | GSE49363 | GEO

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