Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Haemophilus ducreyi 35000HPcpxA gene expression relative to 35000HP

ABSTRACT: Comparative analysis of the global gene expression of a Haemophilus ducreyi 35000HP cpxA deletion mutant relative to the wild type strain

ORGANISM(S): [Haemophilus] ducreyi [Haemophilus] ducreyi 35000HP

PROVIDER: GSE21788 | GEO | 2011/05/03

SECONDARY ACCESSION(S): PRJNA127317

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Haemophilus ducreyi 35000HPcpxA gene expression relative to 35000HP

Project description:Comparative analysis of the global gene expression of a Haemophilus ducreyi 35000HP cpxA deletion mutant relative to the wild type strain After the cpxA mutant was generated, both strain were grown in Columbia Broth. After 8 hr of growth RNA wa isolated and processed for DNA microarray analysis. This study includes three biological replicates (paired samples), and all three were subjected to dye swap.

2011-05-03 | E-GEOD-21788 | biostudies-arrayexpress

Haemophilus ducreyi 35000HPfis relative to 35000HP

Project description:The goal of this study was to compare the global trascription profile of a Haemophilus ducreyi fis deletion mutant to that of the wild type parental strain.

2013-11-04 | GSE44413 | GEO

Haemophilus ducreyi 35000HPhfq relative to 35000HP

Project description:The goal of this study was to compare the global trascription profile of a Haemophilus ducreyi hfq deletion mutant to that of the wild type parental strain.

2014-03-07 | GSE44535 | GEO

Haemophilus ducreyi 35000HPfis relative to 35000HP

Project description:The goal of this study was to compare the global trascription profile of a Haemophilus ducreyi fis deletion mutant to that of the wild type parental strain. This study includes three biological replicates (paired samples of mutant and wild type strains), and all three were subjected to dye swap.

2013-11-04 | E-GEOD-44413 | biostudies-arrayexpress

Haemophilus ducreyi 35000HPhfq relative to 35000HP

Project description:The goal of this study was to compare the global trascription profile of a Haemophilus ducreyi hfq deletion mutant to that of the wild type parental strain. This study includes three biological replicates (paired samples of mutant and wild type strains), and all three were subjected to dye swap.

2014-03-07 | E-GEOD-44535 | biostudies-arrayexpress

Transcriptomes of 35000HP, ÎcpxA, ÎcpxR mutant strains of Haemophilus ducreyi in mid-log, transition, and stationary phase

Project description:To better understand the role of H. ducreyi CpxRA in controlling virulence determinants, here we defined genes potentially regulated by CpxRA by using RNA-Seq. Activation of CpxR by deletion of cpxA repressed nearly 70% of its targets, including seven established virulence determinants. Inactivation of CpxR by deletion of cpxR differentially regulated few genes and increased the expression of one virulence determinant. We identified a CpxR binding motif that was enriched in downregulated but not upregulated targets. These data reinforce the hypothesis that CpxA phosphatase activity plays a critical role in controlling H. ducreyi virulence in vivo. Characterization of the downregulated genes may offer new insights into pathogenesis. RNA of Haemophilus ducreyi wildtype, cpxA and cpxR mutants were collected at mid-log, transition, and stationary phases of growth, in quadruplicate.

2015-11-21 | E-GEOD-75237 | biostudies-arrayexpress

[Haemophilus] ducreyi

Project description:Haemophilus ducreyi 35000HPhfq relative to 35000HP

| PRJNA190031 | ENA

[Haemophilus] ducreyi

Project description:Haemophilus ducreyi 35000HPfis relative to 35000HP

| PRJNA189789 | ENA

Global gene expression profile of Haemophilus ducreyi 35000HPcpxRpML125 relative to 35000HPcpxRpLS88

Project description:Haemophilus ducreyi 35000HPcpxRpML125 which over-expresses CpxR in a CpxR deletion background, was compared to it vector alone counterpart (35000HPcpxRpLS88) in hopes to elucidate members of the CpxRA regulon.

2011-05-03 | GSE21789 | GEO

Transcriptomes of 35000HP, ΔcpxA, ΔcpxR mutant strains of Haemophilus ducreyi in mid-log, transition, and stationary phase

2015-11-21 | GSE75237 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data