Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of glioblastoma stem cells with shRNA-mediated CCR7 knockdown

ABSTRACT: RNA-seq of glioblastoma stem cells with shRNA-mediated CCR7 knockdown

ORGANISM(S): Homo sapiens

PROVIDER: GSE218042 | GEO | 2023/08/04

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

RNA-seq of glioblastoma stem cells treated by CCR7 inhibitors.

Project description:RNA-seq of glioblastoma stem cells treated by CCR7 inhibitors.

2023-08-04 | GSE218041 | GEO

Global transcriptional changes in U87MG glioblastoma cells upon shRNA-mediated TRIM52 knockdown

Project description:shRNA-mediated ablation of the RING-finger protein TRIM52 from multiple glioblastoma cell lines reduces proliferation and tumorigenesis. To identify gene signatures underlying this phenomenon, transcritional profile of TRIM52 knockdown cells was compared to control cells. Upon TRIM52 ablation, we find 278 differentially regulated genes. Gene ontology analysis reveals that many of the upregulated genes are associated with glycolysis and biosynthetic processes.

2018-04-01 | GSE107932 | GEO

Global transcriptional changes in U87MG glioblastoma cells upon shRNA-mediated TRIM52 knockdown

Project description:Global transcriptional changes in U87MG glioblastoma cells upon shRNA-mediated TRIM52 knockdown

| PRJNA421947 | ENA

Nuclear RNA-seq of shRNA-mediated TARBP2 knockdown

Project description:Nuclear RNA-seq of shRNA-mediated TARBP2 knockdown

| PRJNA541853 | ENA

Total RNA-seq of shRNA-mediated TARBP2 knockdown

Project description:Total RNA-seq of shRNA-mediated TARBP2 knockdown

| PRJNA541848 | ENA

shRNA-mediated Myc knockdown and shRNA-mediated knockdown of Myc-induced lncRNA KTN1-AS1 in ST486 Burkitt lymphoma cells

Project description:shRNA-mediated Myc knockdown and shRNA-mediated knockdown of Myc-induced lncRNA KTN1-AS1 in ST486 Burkitt lymphoma cells

| PRJNA490714 | ENA

RNA splicing alteration on glioblastoma and normal neural stem cells

Project description:We identified PHF5A as a functional synthetic-lethal hit in glioblastoma stem cells compared to normal neural stem cells. We wanted to perform analysis of RNA isoforms present in glioblastoma or normal neural stem cells with or without PHF5A depletion. We performed shRNA knockdown of PHF5A or used non-silencing shRNA as a control, selected infected cells with puromycin, and isolated RNA for sequencing.

2015-11-30 | GSE75147 | GEO

RNA-seq of shRNA-mediated EXOSC10 and XRN2 knockdown

Project description:RNA-seq of shRNA-mediated EXOSC10 and XRN2 knockdown

| PRJNA541843 | ENA

Nuclear RNA-seq of shRNA-mediated TARBP2 knockdown

Project description:To identify changes in splicing patterns following TARBP2 knockdown, RNA-sequencing was performed on nuclear RNA extracted from cells expressing shRNAs targeting TARBP2 or a non-targeting shRNA (shControl).

2019-12-26 | GSE130870 | GEO

SOX2 promoter 4C-seq of H9-hESC derived human neural stem cells with mutant IDH1-R132H overexpression, P53 shRNA knockdown and ATRX shRNA knockdown

Project description:4C-seq was performed to assess genomic contacts with the SOX2 protmoter, human neural stem cells with no oncogenic alterations were compared to those with concurrent IDH1-R132H overexpression, P53 shRNA knockdown and ATRX shRNA knockdown.

2017-11-09 | GSE94961 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data