Transcriptomics

Dataset Information

45

Physiology of Pseudomonas aeruginosa in Biofilms Revealed by Comparative Transcriptomic Analysis.


ABSTRACT: Abstract: Transcriptome analysis was applied to characterize the physiological activities of Pseudomonas aeruginosa grown for three days in drip-flow biofilm reactors. Conventional applications of transcriptional profiling often compare two paired data sets that differ in a single experimentally controlled variable. In contrast this study obtained the transcriptome of a single biofilm state, ranked transcript signals to make the priorities of the population manifest, and compared rankings for a priori identified physiological marker genes between the biofilm and published data sets. Overall design: Two drip flow biofilm conditions with three replicates each: (1) baseline control at 72hrs, (2) no treatment for 12 hours past baseline. Data from these two conditions were pooled

INSTRUMENT(S): [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array

ORGANISM(S): Pseudomonas aeruginosa  

SUBMITTER: Kate McInnerney  

PROVIDER: GSE22164 | GEO |

SECONDARY ACCESSION(S): PRJNA127703

REPOSITORIES: GEO

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