Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide nucleosome position data for 12 yeast species

ABSTRACT: We mapped nucleosome positions genome-wide in 12 Ascomycetes

ORGANISM(S): Debaryomyces hansenii Yarrowia lipolytica Lachancea waltii Saccharomyces bayanus Saccharomyces cerevisiae Nakaseomyces glabratus Lachancea kluyveri NRRL Y-12651 Candida albicans Naumovozyma castellii Saccharomyces mikatae Kluyveromyces lactis Saccharomyces paradoxus

PROVIDER: GSE22211 | GEO | 2010/07/06

SECONDARY ACCESSION(S): PRJNA128881

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Genome-wide nucleosome position data for 12 yeast species

Project description:We mapped nucleosome positions genome-wide in 12 Ascomycetes Illumina sequencing of mononucleosomal DNA isolated from mid-log cultures grown in rich medium (abbreviated CM, in house recipe)

2010-07-06 | E-GEOD-22211 | biostudies-arrayexpress

Genome-wide nucleosome position data for 12 yeast species

Project description:Genome-wide nucleosome position data for 12 yeast species

| PRJNA128881 | ENA

Genome-wide nucleosome position data for 3 yeast species

Project description:Genome-wide nucleosome position data for wildtype and mutant strains in S. cerevisiae, C. albicans, and S. pombe

2011-08-01 | GSE28839 | GEO

Genome-wide nucleosome position data for 3 yeast species

Project description:Genome-wide nucleosome position data for wildtype and mutant strains in S. cerevisiae, C. albicans, and S. pombe Illumina sequencing of mononucleosomal DNA isolated from mid-log cultures grown in rich medium (abbreviated CM, in house recipe). S. pombe samples were grown in YES medium at permissive temperature (30C) and restrictive temperature (35C)

2011-08-01 | E-GEOD-28839 | biostudies-arrayexpress

Genome-wide nucleosome position data for 3 yeast species

Project description:Genome-wide nucleosome position data for 3 yeast species

| PRJNA140615 | ENA

Nucleosome positioning for 4 yeast species

Project description:We describe the genome-wide nucleosome profiles of four related yeast species. All species display the same global organization features first described in S. cerevisiae: a stereotypical nucleosome organization along genes, and the classification of promoters into these which contain or lack a pronounced Nucleosome Depleted region (NDR), with the latter displaying a more dynamic pattern of gene expression. This global similarity, however, does not reflect a static evolutionary pattern, as nucleosome positioning at specific genes diverged rapidly leaving practically no similarity between S. cerevisiae and C. glabrata orthologs (~50 Myr). We show that this rapid divergence in nucleosome positioning contrasts a conserved pattern of gene expression, consistent with the idea that divergence of nucleosome patterns has a limited effect on gene expression as many different configurations can support the same regulatory outcome.

2011-12-09 | GSE23577 | GEO

Nucleosome positioning in Yeast

Project description:We report nucleosome poisitioning in Yeast Mono-nucleosome DNA was mapped

2014-02-04 | E-GEOD-52355 | biostudies-arrayexpress

Midlog Yeast Nucleosome Positioning

Project description:To measure nucleosome positions on a genomic scale, we developed a high-throughput DNA microarray method to identify nucleosomal and linker DNA sequences based on susceptibility of linker DNA to micrococcal nuclease. Nucleosomal DNA was isolated and labeled with Cy3 fluorescent dye (green), and mixed with Cy5-labeled total genomic DNA (red). This mixture was hybridized to microarrays printed with overlapping 50mer oligonucleotide probes tiled across chromosomal regions of interest. Keywords = nucleosome Keywords = yeast Keywords = tiling microrray Keywords: repeat sample

2005-07-14 | GSE2563 | GEO

A map of nucleosome positions in yeast at base-pair resolution

Project description:The exact positions of nucleosomes along genomic DNA can influence many aspects of chromosome function, yet existing methods for mapping nucleosomes do not provide the necessary single base pair accuracy to determine these positions. Here we develop and apply a new approach for direct mapping of nucleosome centers based on chemical modification of engineered histones. The resulting map locates nucleosome center positions genome-wide in unprecedented detail and accuracy. It reveals novel aspects of the in vivo nucleosome organization that are linked to transcription factor binding, RNA polymerase pausing, and the higher order structure of the chromatin fiber itself.

2012-05-17 | GSE36063 | GEO

Nucleosome Positioning Dynamics Through the Yeast Metabolic Cycle

Project description:We present Micrococcal Nuclease digestion maps of S. cerevisiae through the progression of the Yeast Metabolic Cycle. We demonstrate that nucleosome positions at many promoters are dynamic, and remodeling events at promoters have significant consequences with respect to gene expression. Examination of nucleosome positions and transcriptional output through metabolic oscillations in budding yeast.

2016-03-15 | E-GEOD-77631 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data