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Effect of 4sU labeling concentrations on quantification bias in nucleotide conversion RNA-seq data

ABSTRACT: To investigate the effect of increasing 4sU labeling concentrations on quantification bias in nucleotide conversion RNA-seq, we labeled 3 different cell lines with increasing concentrations of 4sU. We then measured 4sU dropout in 4sU samples compared to 4sU naive samples.

ORGANISM(S): Homo sapiens

PROVIDER: GSE229504 | GEO | 2024/02/06

REPOSITORIES: GEO

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Effect of 4sU labeling durations on quantification bias in nucleotide conversion RNA-seq data

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Effect of TUC-seq protocol versus SLAM-seq on quantification bias in nucleotide conversion RNA-seq data

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Effect of 4sU labeling on quantification bias in nucleotide conversion RNA-seq data

Project description:This SuperSeries is composed of the SubSeries listed below.

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4sU metabolic labeled transcripts in 65 YRI LCLs

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