Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ovarian transcriptome sequencing (scRNA-seq and RNA-seq) of 6 and 9-month-old mice fed black rice, white brown rice and polished rice

ABSTRACT: Mice were fed black rice, white brown rice and polish rice to compare the effects of different diets on ovarian aging

ORGANISM(S): Mus musculus

PROVIDER: GSE235021 | GEO | 2025/05/18

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptome analysis of rice infected with Rice black streak dwarf virus

2012-12-01 | GSE34263 | GEO

RNA-Seq of gut of colorectal cancer mice fed black rice and control diets

Project description:In order to explore the effect of black rice diet on the development of colorectal cancer in mice, we combined two types of colon cancer mouse models for intestinal transcriptome sequencing to explore the changes in host intestinal gene expression.

2024-06-01 | GSE225104 | GEO

Transcriptome analysis of rice infected with Rice black streak dwarf virus

Project description:Rice black streak dwarf virus (RBSDV) is the causal agent of rice black streak dwarf disease which causes severe loss of rice yield in Asia countries. In this study, we have analyzed the relationship between symptom and host gene responses by RBSDV infection. Comparison between RBSDV and mock infected rice. Biological replicates: 3 control, 3 infected, independently grown and harvested. 1 samples derived from 5 plants grown under same conditons

2012-12-01 | E-GEOD-34263 | biostudies-arrayexpress

Ovarian transcriptome sequencing (scRNA-seq and RNA-seq) of 6 and 9-month-old mice fed black rice, white brown rice and polished rice

Project description:Ovarian transcriptome sequencing (scRNA-seq and RNA-seq) of 6 and 9-month-old mice fed black rice, white brown rice and polished rice

| PRJNA984200 | ENA

Oryza sativa strain:Black Rice | cultivar:Black Rice

Project description:Oryza sativa strain:Black Rice | cultivar:Black Rice Raw sequence reads

| PRJNA681071 | ENA

Gene expression profile of phenylpropanoid pathway in black and red rice pericarps.

Project description:We analyzed expression change of the genes which involved in anthocyanin and pro-anthocyanin biosynthesis to search an origin of black rice. The submitted samples were transcriptome data in black and red rice pericarps. Rice pericarps were harvested in 7 and 14 days after heading, respectively.

2015-04-18 | E-GEOD-67987 | biostudies-arrayexpress

Oryza sativa strain:Manipur Black Rice | cultivar:Manipur Black Rice

Project description:Oryza sativa strain:Manipur Black Rice | cultivar:Manipur Black Rice Raw sequence reads

| PRJNA681073 | ENA

Gene expression profile of phenylpropanoid pathway in black and red rice pericarps.

Project description:We analyzed expression change of the genes which involved in anthocyanin and pro-anthocyanin biosynthesis to search an origin of black rice.

2015-04-18 | GSE67987 | GEO

RNA-Seq of gut of colorectal cancer mice fed black rice and control diets

Project description:RNA-Seq of gut of colorectal cancer mice fed black rice and control diets

| PRJNA933928 | ENA

Proteome profiling highlights mechanisms underlying pigment and tocopherol accumulation in red and black rice seeds

Project description:Rice is a major component of the human diet and feeds more than 50 million people across the globe. Therefore, efforts are being made to improve the nutritional quality of rice seeds in order to make a super-rice cultivar rich in antioxidants and vitamins. We previously developed two rice cultivars, Super-hongmi (red seeds) and Super-jami (black seeds), that were highly rich in antioxidants and exhibited high levels of radical scavenging activities. However, the molecular mechanism underlying the color development and accumulation of different antioxidants in these rice cultivars remains largely elusive. Here, we report the proteome profiles of mature Super-hongmi, and Super-jami seeds and compared with the Hopum (white seeds) using a label-free quantitative proteomics approach. This approach led to the identification of 5127 rice seed proteins of which 1628 showed significant changes (ANOVA, Benjamini-Hochberg FDR ≤ 0.01, fold change ≥ 1.5). Functional annotation of the differentially modulated proteins led to the identification of a phytoene desaturase (PDS3) that was highly enriched in the red seeds and was decreased in the black seeds as compared to the control white seeds. PDS3 is involved in the conversion of phytoene to ζ-carotene which may be responsible for the accumulation of red color in red seeds. Moreover, black seeds seem to accumulate higher levels of anthocyanins because of the higher abundance of dihydroflavonol 4-reductase. In addition, proteins associated with lignin and tocopherol biosynthesis were found to be highly increased in both red and black cultivars. Taken together, these data report the seed proteome of three different colored rice seeds and identify novel components associated with pigment accumulation.

2023-09-21 | PXD039588 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data