Genomics

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Gis2 affinity isolations


ABSTRACT: To identify RNAs specifically associated with Gis2p, cells expressing TAP-tagged Gis2 or the wild-type strain BY4741 (mock control) were grown to mid-log phase in rich medium and harvested by centrifugation. RNA affinity isolations were essentially performed as described (Gerber et al. 2004 PLoS Biol.; see associated protocol 526). In brief, TAP-tagged protein were captured from cell extracts with IgG coupled agarose beads (Sigma) and released by incubation with a site-specific protease (AcTEV, Sigma). from the extract (input) and from the affinity isolates was purified with the RNeasy Mini/ Micro Kit (Qiagen). RNAs were reverse transcribed using a mixture of oligo-dT and random nonamer oligos in the presence of amino-allyl dUTP/dNTP mixture. cDNAs were fluorescently labeled and hybridized on yeast oligo microarrays over night at 42 degrees in formamide-based hybridization buffer. Set of arrays that are part of repeated experiments Genotype: TAP-tagged Gis2 expressing or wild-type strain BY4741 (wt/gis2)

ORGANISM(S): Saccharomyces cerevisiae

PROVIDER: GSE24003 | GEO | 2010/12/22

SECONDARY ACCESSION(S): PRJNA133213

REPOSITORIES: GEO

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