Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptionally active genomic regions defined by H3K27ac mark (H3K27ac HT-ChIPmentation)

ABSTRACT: The goal of this study was to define the acetylation mark H3K27ac profile by HT-ChIPmentation followed by sequencing in alveolar macrophages of wild-type mice, allowing us to identify the transcriptionally-active genomic regions.

ORGANISM(S): Mus musculus

PROVIDER: GSE243163 | GEO | 2026/05/13

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Analysis of the genomic regions controlled by RXRα in alveolar macrophages (RXR HT-ChIPmentation)

Project description:The goal of this study was to define the cistrome of RXR by HT-ChIPmentation followed by sequencing in alveolar macrophages of wild-type and RXRαβ-deficient mice, in order to identify genomic regions directly controlled by these transcription factors. Due to technical antibody limitations, the ChIPmentation was performed using only the antibody against RXRα

2026-05-13 | GSE243164 | GEO

Analysis of the genomic regions controlled by PPARγ in alveolar macrophages (PPARγ HT-ChIPmentation)

Project description:The goal of this study was to define the cistrome of PPARγ by HT-ChIPmentation followed by sequencing in alveolar macrophages of wild-type mice, in order to identify genomic regions directly controlled by this transcription factor.

2026-05-13 | GSE314337 | GEO

Analysis of the genomic regions controlled by RBPJ in alveolar macrophages (RBPJ HT-ChIPmentation)

Project description:The goal of this study was to define the cistrome of RBPJ by HT-ChIPmentation followed by sequencing in alveolar macrophages of wild-type mice, in order to identify genomic regions directly controlled by this transcription factor.

2026-05-13 | GSE314336 | GEO

Analysis of the genomic regions controlled by SMAD4 in alveolar macrophages (SMAD4 HT-ChIPmentation)

Project description:The goal of this study was to define the cistrome of SMAD4 by HT-ChIPmentation followed by sequencing in alveolar macrophages of wild-type mice, in order to identify genomic regions directly controlled by this transcription factor.

2026-05-13 | GSE255365 | GEO

Peripheral regions and central regions from HT-29 tumors

Project description:Gene expression of peripheral regions and central regions from HT-29 tumors

2015-01-10 | GSE64831 | GEO

ChIPmentation: fast, cheap, low-input ChIP-seq for histones and transcription factors

Project description:Chromatin immunoprecipitation followed by next generation sequencing (ChIP-seq) is widely used to map histone marks and transcription factor binding throughout the genome. Here we present ChIPmentation, a method that combines ChIP with sequencing library preparation by Tn5 transposase (“tagmentation”). ChIPmentation introduces sequencing-compatible adapters in a single-step reaction directly on bead-bound chromatin, which reduces time, cost, and input requirements, making ChIPmentation a convenient and high-throughput alternative to existing ChIP-seq protocols.

2015-08-17 | GSE70482 | GEO

Detecting transcriptionally active regions using genomic tiling arrays.

Project description: Not available

| S-EPMC1779562 | biostudies-literature

HSV-1 infection induces a downstream-shift of the +1 nucleosome (H2A.Z ChIPmentation)

Project description:HFFF cells were either mock or WT strain 17 HSV-1 infected for 8 h. Samples were processed according to the original ChIPmentation protocol (Schmidl C et al. ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors. Nat Methods. 2015) with few changes as explained in the Materials and Methods section.

2025-02-27 | GSE212867 | GEO

H3K4me3 ChIPmentation-seq, human primary fibroblasts

Project description:Chromatin immunoprecipitation coupled with tagmentation followed by next-generation sequencing (ChIPmentation-seq) for histone H3 lysine 4 trimethylation (H3K4me3) was performed in human primary fibroblasts. H3K4me3 is a mark of active promoters and was used to identify open, transcriptionally active chromatin in primary dermal fibroblasts isolated from healthy donors.

2026-05-04 | GSE329794 | GEO

The transcriptionally active regions in the genome of Bacillus subtilis.

Project description: Not available

| S-EPMC2784878 | biostudies-literature