Transcriptomics

Dataset Information

44

Transcriptome response to different carbon sources in Acetobacter aceti


ABSTRACT: Acetic acid bacteria are obligately aerobic alphaproteobacteria that have a unique ability to incompletely oxidize various alcohols and sugars to organic acids. The ability of these bacteria to incompletely oxidize ethanol to acetate has been historically utilized for vinegar production. The mechanism of switching between incomplete oxidation and assimilatory oxidation and the control of energy and carbon metabolism in acetic acid bacteria are not fully understood. To understand the physiology and molecular biology of acetic acid bacteria better, we determined the draft genome sequence of Acetobacter aceti NBRC 14818, which is the type strain of the genus. Based on this draft genome sequence, the transcriptome profiles in A. aceti cells grown on ethanol, acetate, glucose, or mix of ethanol and glucose was determined by using NimbleGen Prokaryotic Expression array (4x72K). Overall design: Acetobacter aceti NBRC14818 was cultivated in the medium containing ethanol, acetate, glucose, or mix of ethanol and glucose as carbon sources in Erlenmeyer flask with rotary shaking. Total RNA was extracted when optical density at 600 nm was 0.3-0.4. The experiment was performed in duplicate independent cultures.

INSTRUMENT(S): NimbleGen Acetobacter aceti NBRC14818 4X72K array Univ. of Tokyo v1.0

ORGANISM(S): Acetobacter aceti NBRC 14818  

SUBMITTER: Hiroyuki Arai 

PROVIDER: GSE24361 | GEO | 2011-01-17

SECONDARY ACCESSION(S): PRJNA132821

REPOSITORIES: GEO

Similar Datasets

2011-01-17 | E-GEOD-24361 | ArrayExpress
2009-09-30 | GSE18183 | GEO
2010-05-22 | E-GEOD-18183 | ArrayExpress
| PRJNA288385 | ENA
| GSE99767 | GEO
2007-08-31 | GSE8895 | GEO
2009-08-31 | GSE17877 | GEO
2011-04-15 | E-BUGS-87 | ArrayExpress
2008-06-16 | E-GEOD-8895 | ArrayExpress
2014-09-08 | E-GEOD-57553 | ArrayExpress