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Transcriptome analysis of a breeding program pedigree

ABSTRACT: Transcriptome comparison of 15 lines representing the University of Minnesota six-rowed malting breeding program at two time points of the malting process: 'out of steep' and '3 days of germination'. Three replicates of each genotype and time point were accomplished. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Maria Muñoz-Amatriain. The equivalent experiment is BB91 at PLEXdb.]

ORGANISM(S): Hordeum vulgare

PROVIDER: GSE24534 | GEO | 2010/10/07

SECONDARY ACCESSION(S): PRJNA132557

REPOSITORIES: GEO

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Transcriptome analysis of a breeding program pedigree

Project description:Transcriptome comparison of 15 lines representing the University of Minnesota six-rowed malting breeding program at two time points of the malting process: 'out of steep' and '3 days of germination'. Three replicates of each genotype and time point were accomplished. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Maria Muñoz-Amatriain. The equivalent experiment is BB91 at PLEXdb.] genotype: Bonanza - time: 0 days(3-replications); genotype: Bonanza - time: 3 days(3-replications); genotype: Cree - time: 0 days(3-replications); genotype: Cree - time: 3 days(3-replications); genotype: Dickson - time: 0 days(3-replications); genotype: Dickson - time: 3 days(3-replications); genotype: Excel - time: 0 days(3-replications); genotype: Excel - time: 3 days(3-replications); genotype: Lacey - time: 0 days(3-replications); genotype: Lacey - time: 3 days(3-replications); genotype: M1 - time: 0 days(3-replications); genotype: M1 - time: 3 days(3-replications); genotype: M44 - time: 0 days(3-replications); genotype: M44 - time: 3 days(3-replications); genotype: M46 - time: 0 days(3-replications); genotype: M46 - time: 3 days(3-replications); genotype: M55 - time: 0 days(3-replications); genotype: M55 - time: 3 days(3-replications); genotype: M66 - time: 0 days(3-replications); genotype: M66 - time: 3 days(3-replications); genotype: M78 - time: 0 days(3-replications); genotype: M78 - time: 3 days(3-replications); genotype: Manker - time: 0 days(3-replications); genotype: Manker - time: 3 days(3-replications); genotype: Morex - time: 0 days(3-replications); genotype: Morex - time: 3 days(3-replications); genotype: Robust - time: 0 days(3-replications); genotype: Robust - time: 3 days(3-replications); genotype: Stander - time: 0 days(3-replications); genotype: Stander - time: 3 days(3-replications)

2010-10-06 | E-GEOD-24534 | biostudies-arrayexpress

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Project description:Transcriptome comparison of the winter malting barley '88Ab536' with the spring malting variety 'Morex' at two time points of the malting process: 'out of steeping' and '3 days of germination'. Three replicates of each genotype and time point were accomplished. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Maria Munoz-Amatriain. The equivalent experiment is BB76 at PLEXdb.]

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Project description:Comparison of mRNA accumulation in the seedling leaves of 8 unstressed barley cultivars ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, . The equivalent experiment is BB20 at PLEXdb.]

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Project description:Comparison of wild type barley plants versus plants over-expressing ODDSOC2; a vernalization responsive MADS box gene ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Aaron Greenup. The equivalent experiment is BB93 at PLEXdb.]

2010-05-13 | GSE21804 | GEO

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Project description:Gene expression changes in a winter cultivar of barley in response to short and long term cold treatments ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Ben Trevaskis. The equivalent experiment is BB94 at PLEXdb.]

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Gene expression in grapevine in response to Bois noir infection

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Barley cv Morex inoculated with Fusarium graminearum and water as mock control

Project description:Barley cv. Morex inoculated with Fusarium graminearum (isolate Butte 86) or water (mock). Sampled at 24, 48, 72, 96 and 144 hours after treatment. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Jayanand Boddu. The equivalent experiment is BB9 at PLEXdb.]

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