Transcriptomics

Dataset Information

28

HP1gamma Knock Down in Human cells


ABSTRACT: Study of HP1 Knock Down on gene expression and splicing regulation in Human HeLa cells Maturation of pre-mRNAs is initiated co-transcriptionally. It is therefore conceivable that chromatin-borne information participates in alternative splicing. Here, we find that elevated levels of tri-methylation of histone H3 on lysine 9 (H3K9me3) are a characteristic of the alternative exons of several genes including CD44. On this gene, the chromodomain protein HP1gamma, frequently defined as a transcriptional repressor, facilitates inclusion of the alternative exons via a mechanism involving decreased RNA polymerase II elongation rate. In addition, accumulation of HP1gamma on the variant region of the CD44 gene stabilizes association of the pre-mRNA with the chromatin. Altogether, our data provide evidence for localized histone modifications impacting alternative splicing. They further implicate HP1gamma as a possible bridging molecule between the chromatin and the maturating mRNA, with a general impact on splicing decisions. Overall design: Transcriptome analysis of siRNA anti-HP1gamma transfected HeLa cells on GeneChip® Human Exon 1.0 ST Arrays (Affymetrix). Control HeLa cells have been transfected with the same concentration of siRNA anti-GAPDH. Experiment has been done in experimental triplicates.

INSTRUMENT(S): [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]

ORGANISM(S): Homo sapiens  

SUBMITTER: Violaine Saint-André 

PROVIDER: GSE25282 | GEO | 2011-02-27

SECONDARY ACCESSION(S): PRJNA134825

REPOSITORIES: GEO

Similar Datasets

2011-02-27 | E-GEOD-25282 | ArrayExpress
2011-02-01 | GSE26463 | GEO
2011-02-01 | E-GEOD-26463 | ArrayExpress
2010-10-01 | E-MTAB-367 | ArrayExpress
| GSE81460 | GEO
2011-03-08 | GSE22952 | GEO
2011-03-08 | E-GEOD-22952 | ArrayExpress
2018-10-05 | PXD008197 | Pride
2011-12-22 | E-GEOD-28672 | ArrayExpress
| GSE28672 | GEO