Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ScRNAseq of the BM immunophenotypic HSC fraction with tracing random DNA-barcode 20 weeks after transplantation

ABSTRACT: Random DNA barcode could identified the functional atributes in immunophenotypic HSC fraction. Combined scRNA-seq with tracing random DNA-barcode could identifed specific molecular signature of the theses functional atributes.

ORGANISM(S): Mus musculus

PROVIDER: GSE255989 | GEO | 2025/12/31

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

scRNAseq of the BM immunophenotypic HSC fraction with tracing random DNA-barcode 20 weeks after transplantation

Project description:scRNAseq of the BM immunophenotypic HSC fraction with tracing random DNA-barcode 20 weeks after transplantation

| PRJNA1077357 | ENA

Digital counting of nucleic acid molecules using random base molecular barcodes

Project description:Several template DNA molecules with random base molecular barcodes were amplified and sequenced, and the efficacy of the random base barcode for digital counting was shown.

2017-10-19 | GSE94895 | GEO

HIFI-Barcode-se400

Project description:HIFI-Barcode-se400

| PRJEB29212 | ENA

Analyses of barcode repertoire in hematopoietic cells

Project description:We compared the barcode repertoire in circulating leukocytes, and cardiac and renal macrophages.

2024-02-13 | GSE160072 | GEO

Inference and effects of barcode multiplets in droplet-based single-cell assays

Project description:A widespread assumption for single-cell analyses specifies that one cell’s nucleic acids are predominantly captured by one oligonucleotide barcode. However, we show that ~13-21% of cell barcodes from the 10x Chromium scATAC-seq assay may have been derived from a droplet with more than one oligonucleotide sequence, which we call “barcode multiplets”. We demonstrate that barcode multiplets can be derived from at least two different sources. First, we confirm that approximately 4% of droplets from the 10x platform may contain multiple beads. Additionally, we find that approximately 5% of beads may contain detectable levels of multiple oligonucleotide barcodes. We show that this artifact can confound single-cell analyses, including the interpretation of clonal diversity and proliferation of intra-tumor lymphocytes. Overall, our work provides a conceptual and computational framework to identify and assess the impacts of barcode multiplets in single-cell data.

2020-01-07 | GSE143197 | GEO

Proteus mirabilis strain:Barcode 2

Project description:Proteus mirabilis strain:Barcode 2 Assembly

| PRJNA1067309 | ENA

Random bioactive sequences

Project description:Random sequences are an abundant source of bioactive RNAs or peptides

| PRJEB19640 | ENA

mais barcode

Project description:Calmodulin gene as a barcode locus for identification of mycotoxigenic fungal species occurring on maize

| PRJEB31140 | ENA

Bone invigorates metstatic seeding [evolving barcode]

Project description:Bone invigorates metstatic seeding [evolving barcode]

| PRJNA675669 | ENA

scRNA-seq of barcode labelled cells of the postnatal mouse cochlea

Project description:E7.5 embryos were injected with LV-EF1A-H2B-tdTomato-30N barcode using ultrasound guided injections. Pups were collected at postnatal stage and single cell RNA sequenced using 10X sequencing.

2025-02-10 | E-MTAB-14691 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data