Genomics

Dataset Information

0

Transduction signaling signature of Wilms tumor revealed by parallel analysis of kidney differentiation


ABSTRACT: Precise regulation of transduction signaling pathways genes is crucial for correct differentiation of kidney cells and perturbation may lead to tumor onset. Wilms tumors (WT), or nephroblastoma, originates from the metanephric blastema cells, which were unable to complete the differentiation, resulting in a triphasic tumor composed by distinct cell types, blastemal, epithelial and stromal, where the former harbor molecular characteristics similar to cells of the earliest stages of kidney development. In this study, to identify key early events involved in the disruption of correct cell signaling during kidney differentiation that can drive WT, we developed a cDNA platform containing genes from signaling transduction pathways. By using bioinformatics tools, we defined high conserved regions between human and mouse orthologous genes and assessed the gene modulation in blastemal cells captured from WT and differentiated kidneys (DK) in human and from four temporal stages of kidney differentiation in mouse. We found 18 genes, whose transcriptional level of the earliest phases of blastemal cell differentiation was recapitulated in WT. PAX2, FZD10, SHPK, WNT5B, FZD2, CRABP2, FRZB, GRK7, TESK1, HDGF and IGF2 were up- and MAPK9, PIK3CA, FRAT2, ITPR3, CDH6, HIPK1 and TIMP3 were down-regulated in WT respectively. Hierarchical clustering based on the expression of this gene set grouped DK from both species, human and mouse, and discriminated them from fetal kidney and WT in human, and the earliest kidney stages in mouse, validating the model proposed by this study and reveling a transduction signaling signature of WT. High robustness of this data was detected since expression level was tested by quantitative RT-PCR in the initial and independent sample set, with 75 and 56% of agreement. Agreement of 62% was also observed in protein level assessing blastemal component of an independent group of 137 WT. Protein expression of CRABP2, IGF2, GRK7, TESK1, HDGF, WNT5B, FZD2 and TIMP3 was also characterized in human fetal kidneys revealing interesting aspects of kidney differentiation. This study identified key genes modulated during kidney differentiation which may play a determinant role for WT onset. As far as we know, FZD10, FRZB, HDGF, MAPK9, FRAT2, SHPK, WNT5B, GRK7, TESK1, HDGF, PIK3CA, ITPR3, HIPK1 and TIMP3 were not previously associated to WT.

ORGANISM(S): Mus musculus Homo sapiens

PROVIDER: GSE25965 | GEO | 2011/12/07

SECONDARY ACCESSION(S): PRJNA135435

REPOSITORIES: GEO

Similar Datasets

2011-12-07 | E-GEOD-25965 | biostudies-arrayexpress
2014-04-25 | E-GEOD-36336 | biostudies-arrayexpress
2013-07-01 | E-GEOD-42303 | biostudies-arrayexpress
2014-04-25 | GSE36336 | GEO
2020-06-01 | GSE100499 | GEO
2013-07-01 | GSE42303 | GEO
2015-02-18 | E-GEOD-53224 | biostudies-arrayexpress
2015-02-18 | GSE53224 | GEO
2022-11-14 | GSE150684 | GEO
2020-05-08 | GSE150074 | GEO