Genomics

Dataset Information

42

Expression data of distinct organs in Arabidopsis


ABSTRACT: We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome in leaf, root, stem, flower, early silique, middle silique and late silique. Overall design: To obtain approximately 3-week-old leaf and root, plants were grown on a 0.5% gelangum (Wako) containing 0.5% sucrose and 1/2 MS at 22℃ under the continuous light condition. In case of sampling for other tissues (stem, flower, early silique, middle silique, and late silique), plants were grown on soil in pots at 22℃ under 16-h light/8-h dark cycle. Three replicative hybridization experiments for each strand array were carried out using the independent biological RNA samples.

INSTRUMENT(S): [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array

SUBMITTER: Motoaki Seki  

PROVIDER: GSE26074 | GEO | 2010-12-22

SECONDARY ACCESSION(S): PRJNA135203

REPOSITORIES: GEO

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Publications

ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses.

Iida Kei K   Kawaguchi Shuji S   Kobayashi Norio N   Yoshida Yuko Y   Ishii Manabu M   Harada Erimi E   Hanada Kousuke K   Matsui Akihiro A   Okamoto Masanori M   Ishida Junko J   Tanaka Maho M   Morosawa Taeko T   Seki Motoaki M   Toyoda Tetsuro T  

Plant & cell physiology 20110112 2


Recent advances in technologies for observing high-resolution genomic activities, such as whole-genome tiling arrays and high-throughput sequencers, provide detailed information for understanding genome functions. However, the functions of 50% of known Arabidopsis thaliana genes remain unknown or are annotated only on the basis of static analyses such as protein motifs or similarities. In this paper, we describe dynamic structure-based dynamic expression (DSDE) analysis, which sequentially predi  ...[more]

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