Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations

ABSTRACT: To identify direct targets of OsWRKY11, we performed DNA affinity purification sequencing (DAP-seq).

ORGANISM(S): Oryza sativa

PROVIDER: GSE266156 | GEO | 2025/05/04

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations

Project description:To identify direct targets of OsWRKY11 in vivo, we performed chromatin immunoprecipitation sequencing (ChIP-seq).

2024-05-04 | GSE266082 | GEO

Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations

Project description:Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations

| PRJNA1106022 | ENA

Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations

Project description:Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations

| PRJNA1105855 | ENA

Identifying transcription factor-DNA interactions using machine learning

Project description:We focused on building models that incorporated transcription factor (TF)-DNA interaction data for 12 members of the Auxin Response Factor (ARF) family from soybean as assessed by DNA Affinity Purification and sequencing (DAP-seq).

2023-06-01 | GSE193400 | GEO

OsFD4 promotes the rice floral transition via florigen activation complex formation in the shoot apical meristem

Project description:We used mutant analysis, protein–protein interaction assays and DNA affinity purification (DAP) sequencing coupled to in silico prediction of binding syntaxes to study several bZIP proteins that assemble into florigen activation/repressor complexes (FACs/FRCs).

2022-07-10 | GSE207402 | GEO

Deciphering the regulatory network of the NAC transcription factor FvRIF, a master regulator in controlling strawberry fruit ripening [DAP-seq]

Project description:To better understand FvRIF-mediated transcriptional regulation of fruit ripening, we performed DNA affinity purification sequencing (DAP-seq) to unravel FvRIF binding sites at the genome level. For DAP-seq analysis, the recombinant FvRIF fusion protein was used to purify the sheared genomic DNA of strawberry fruits. Two independent biological replicates of DAP-seq and DNA ‘input’ negative control libraries were prepared and submitted for deep sequencing.

2023-11-08 | GSE220785 | GEO

Transcription factor binding divergence across maize inbred lines drives transcriptional and phenotypic variation

Project description:We use DNA affinity purification-sequencing (DAP-seq) to map transcription factor binding events for 200 maize TFs belonging to 30 distinct families and heterodimer pairs in two distinct inbred lines historically used for maize hybrid plant production

2025-05-05 | GSE275897 | GEO

Project description:DNA Affinity Purification (DAP) Sequencing Method Development

| PRJNA758434 | ENA

DNA affinity purification sequencing (DAP-seq) data of LEAFY (LFY)

Project description:In this study, we use DNA affinity purification sequencing to identiy genome-wide binding of LFY transcription factor, a master regulator of flower development in Arabidopsis. We generated two sets of data, one using genomic DNA from plant tissue, thus retain DNA methylation, as probe for DNA affinity purification (DAP-seq dataset), and the other using PCR amplified genomic DNA (without DNA methylation; AmpDAP-seq dataset).

2021-03-25 | GSE160013 | GEO

Arabidopsis thaliana

Project description:The DNA affinity purification DAP-Seq assay [ChIP-seq]

| PRJNA257558 | ENA