Genomics

Dataset Information

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Predicting a human gut microbiota's response to diet in gnotobiotic mice.


ABSTRACT: The interrelationships between our diets and the structure and operations of our gut microbial communities are poorly understood. A model microbial community of ten sequenced human gut bacteria was introduced into gnotobiotic mice and changes in the abundance of each species were measured in response to randomized perturbations of four defined ingredients in the host diet. From the responses, we developed a statistical model that predicted over 50% of the variation in species abundance in response to the diet perturbations and were able to identify which factors in the diet best explained the changes seen for each community member. The community’s transcriptional response was driven by the absolute abundance of each species, as diet ingredient concentrations were not associated with significant changes in the transcription of individual community members.

ORGANISM(S): Bacteroides thetaiotaomicron VPI-5482 Bacteroides ovatus ATCC 8483 [Clostridium] symbiosum Collinsella aerofaciens ATCC 25986 Agathobacter rectalis ATCC 33656 Desulfovibrio piger GOR1 Marvinbryantia formatexigens DSM 14469 Escherichia coli str. K-12 substr. MG1655 Bacteroides caccae ATCC 43185 Bacteria Blautia hydrogenotrophica DSM 10507

PROVIDER: GSE26687 | GEO | 2011/05/20

SECONDARY ACCESSION(S): PRJNA136593

REPOSITORIES: GEO

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