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ENCODE Transcript Mapping for Human Placental Poly(A)+ RNA

ABSTRACT: Transcript Mapping on Affymetrix ENCODE arrays for 3 different biological replicates of Placental Poly(A)+ RNA (each with either 2 or 3 technical replicates) Keywords = Transcript Mapping, Human, Affymetrix, Genome Tiling Arrays Keywords: other

ORGANISM(S): Homo sapiens

PROVIDER: GSE2671 | GEO | 2005/05/18

REPOSITORIES: GEO

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ENCODE Transcript Mapping for Human Placental Poly(A)+ RNA

Project description:Transcript Mapping on Affymetrix ENCODE arrays for 3 different biological replicates of Placental Poly(A)+ RNA (each with either 2 or 3 technical replicates) Keywords = Transcript Mapping, Human, Affymetrix, Genome Tiling Arrays Keywords: other

2010-06-10 | E-GEOD-2671 | biostudies-arrayexpress

ENCODE Transcript Mapping for Human Neutrophil (PMN) Total RNA

Project description:Transcript Mapping on Affymetrix ENCODE arrays for 10 different biological replicates of Neutrophil (PMN) Total RNA (each with 2 technical replicates). Each biological sample is from a different individual. Keywords = Transcript Mapping, Human, Affymetrix, Genome Tiling Arrays Keywords: other

2005-05-19 | GSE2678 | GEO

ENCODE Transcript Mapping for Human HeLa Poly(A)+ RNA

Project description:Transcript Mapping on Affymetrix ENCODE arrays for 3 different biological replicates of HeLa Poly(A)+ RNA Keywords: other

2007-04-06 | GSE7437 | GEO

ENCODE Transcript Mapping for Total RNA from Human NB4 Cells untreated, treated with RA, and treated with TPA

Project description:Transcript Mapping on Affymetrix ENCODE arrays for Total RNA from 4 different samples (2 or 3 technical replicates of each). All of the four same NB4 samples have also been treated with Retanoic Acid (RA) (2 or 3 technical replicates of each). Three of the four same NB4 samples have also been treated with TPA (2 or 3 technical replicates of each). RA treated NB4 cells can be partially differentiated to Neutrophils and TPA treated NB4 cells can be differentiated to Monocytes. Keywords = Transcript Mapping, Human, Affymetrix, Genome Tiling Arrays Keywords: parallel sample

2005-05-19 | GSE2679 | GEO

ENCODE Transcript Mapping for Human HeLa Total RNA

Project description:Transcript Mapping on Affymetrix ENCODE arrays for 3 different biological replicates of HeLa Total RNA Keywords: other

2007-04-06 | GSE7467 | GEO

ENCODE Transcript Mapping for Total RNA from Human NB4 Cells untreated, treated with RA, and treated with TPA

2010-06-10 | E-GEOD-2679 | biostudies-arrayexpress

ENCODE ChIP-chip for STAT1 on Human Hela S3 Cells

Project description:STAT1 ChIP-chip performed on Human Hela S3 Cells for three different platforms. Nimblegen ENCODE arrays which comprise 50mer oligonucleotides spaces every 38bps (overlapping by 12nts) (5 biological replicates), custom maskless array tiling most of ENCODE with 50mer oligonucleotides end-to-end (3 biological replicates) and custom maskless array tiling most of ENCODE with 36mer oligonucleotides end-to-end (2 biological replicates). The chromatin-immunoprecipitation protocol is the same for all samples, however the labelling and hybridization protocols differ between Nimblegen and custom maskless arrays. Keywords = Transcription Factor Binding, STAT1, ChIP-chip, Human, Genome Tiling Arrays Keywords: other

2005-05-27 | GSE2714 | GEO

Cyclin D1 Determines Androgen Dependent DNA Damage Sensing and Repair

Project description:Murine prostate epithelial cells (PECs) were obtained from Ccnd1-/- and Ccnd1+/+ FvB mice (2-3 months of age). RNA extracted from PECs (3 technical replicates for each group) was labeled and used to probe Affymetrix 430_2.0 arrays.

2014-09-01 | GSE57867 | GEO

Burn-CLP

Project description:The experimental design included three biological replicates for each of the three conditions: Sham-Sham, Sham-CLP and burn-CLP. Liver samples were collected from the rats and the total RNA was analyzed on a Affymetrix RAE230A chip. No technical replicates were included in the study Keywords: other

2005-09-20 | GSE1781 | GEO

Copy number profiling of 45 human breast cancer cell lines on Affymetrix 100K SNP arrays

Project description:Breast cancer cell lines grown in full serum under standard conditions were profiled on Affymetrix GeneChip Mapping 100K Set Arrays Keywords: Mapping Array

2009-04-22 | GSE13696 | GEO

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