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Differences in the transcriptomes of organically and conventionally grown potatoes.

ABSTRACT: Microarray analysis was performed on a well-defined set of potato tuber samples grown under different, well-recorded environmental conditions. The data were analysed to assess the potential of transcriptomics to detect differences in gene expression as a result of these environmental conditions. Differences were found for both factors, both in PCA and in ANOVA analysis.

ORGANISM(S): Solanum tuberosum

PROVIDER: GSE27662 | GEO | 2012/01/31

SECONDARY ACCESSION(S): PRJNA138483

REPOSITORIES: GEO

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Differences in the transcriptomes of organically and conventionally grown potatoes.

2011-12-31 | E-MTAB-605 | biostudies-arrayexpress

Differences in the transcriptomes of organically and conventionally grown potatoes.

Project description:Microarray analysis was performed on a well-defined set of potato tuber samples grown under different, well-recorded environmental conditions. The data were analysed to assess the potential of transcriptomics to detect differences in gene expression as a result of these environmental conditions. Differences were found for both factors, both in PCA and in ANOVA analysis. Factorial design; 1 potato cultivar (Sante); 2 fertilizers (organic, conventional); 2 crop protection treatments (organic, conventional), 4 biological replicates, 16 samples. Raw data files: columns 1 - 11 is Cy3, 12 - 21 is Cy5

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