Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CO1 network analysis in poplar

ABSTRACT: We conducted microarray experiments by comparing constitutive constructs with appropriate controls, followed by the identification of downstream targets of Pro35S:CO1

ORGANISM(S): Populus tremula x Populus alba Populus sp.

PROVIDER: GSE28689 | GEO | 2011/12/29

SECONDARY ACCESSION(S): PRJNA143069

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

CO1 network analysis in poplar

Project description:We conducted microarray experiments by comparing constitutive constructs with appropriate controls, followed by the identification of downstream targets of Pro35S:CO1 Four samples of mature leaf tissues were collected from four independent lines of 35S:CO1 and pBI101. RNA was extracted from tissues and hybridized on Affymetrix Genechip Poplar Genome Array.

2011-12-29 | E-GEOD-28689 | biostudies-arrayexpress

CO2 network analysis in poplar

Project description:We conducted microarray experiments by comparing constitutive constructs with appropriate controls, followed by the identification of downstream targets of Pro35S:CO2.

2011-12-29 | GSE28693 | GEO

CO2 network analysis in poplar

Project description:We conducted microarray experiments by comparing constitutive constructs with appropriate controls, followed by the identification of downstream targets of Pro35S:CO2. Four samples of mature leaf tissues were collected from four independent lines of 35S:CO2 and pBI101. RNA was extracted from tissues and hybridized on Affymetrix Genechip Poplar Genome Array.

2011-12-29 | E-GEOD-28693 | biostudies-arrayexpress

FT1 and FT2 network analysis in poplar

2011-05-23 | GSE24609 | GEO

FT1 and FT2 network analysis in poplar

Project description:We conducted microarray experiments by comparing constitutive and inducible Flowering Locus T1 (FT1) and FT2 constructs with appropriate controls, followed by the identification of common targets of Pro35S:FT1 and ProHSP:FT1 or Pro35S:FT2 and ProHSP:FT2. Independent samples of leaf tissues were collected from 1- to 2-year-old plants. Each replication represents an individual plant from one of the treatment lines. RNA was extracted from tissues and hybridized on the Affymetrix GeneChip Poplar Genome Array.

2011-05-23 | E-GEOD-24609 | biostudies-arrayexpress

CO1 and CO2 network analysis in poplar

Project description:This SuperSeries is composed of the following subset Series: GSE28689: CO1 network analysis in poplar GSE28693: CO2 network analysis in poplar Refer to individual Series

2011-12-29 | E-GEOD-28706 | biostudies-arrayexpress

Overexpression of PtaHB1, Homeodomaine-leucine-Zipper class III, in hybrid poplar

Project description:Transcriptional profiling of primary xylem tranformed cells comparing control empty vector to PtaHB-1 overexpressed Over-expression constructs were obtained by inserting the complete coding sequences of PtaHB1 and PtaHB7 from P. tremula x P. alba between the maize ubiquitin promoter (Christensen et al., 1992) and a 35S terminator into the pCambia1305.2 vector (www.cambia.org). The resulting plasmids were then transferred into A. tumefaciens strain C58 pGV2260 (Hellens et al., 2000).

2010-10-15 | GSE24703 | GEO

Overexpression of PtaHB1, Homeodomaine-leucine-Zipper class III, in hybrid poplar

2010-10-15 | E-GEOD-24703 | biostudies-arrayexpress

C5aR+ dendritic cells fine-tune the Peyer’s patch microenvironment to induce antigen-specific CD8+ T cells

Project description:The mucosa is an ideal route for vaccination against pathogen infection, but the effective adjuvant capable of overcoming the tolerogenic dendritic cell (DC) environment is unavailable. We characterized type 2 conventional DCs and lysozyme-expressing monocyte-derived DCs (LysoDCs) of Peyer’s patches to identify the vaccination target cells through single-cell RNA sequencing. Based on functional analysis of the data, we suggest that C5aR+ LysoDCs and Co1 peptide, a C5aR ligand, as a target cell and an adjuvant, respectively, for mucosal vaccination. Co1-mediated stimulation of C5aR+ LysoDCs increased the level of reactive oxygen species, leading to CCL3-mediated chemotaxis and exogenous antigen cross-presentation, which elicited an antigen-specific CD8+ T cell response. In a SARS-CoV-2 vaccine model, Co1 peptide increased the frequency of antigen-specific polyfunctional CD8+ T cells in systemic as well as mucosal compartments. Collectively, LysoDC activation by Co1 peptide potentiates vaccination efficiency by constructing an immunostimulatory environment in the mucosal immune inductive site.

2023-07-24 | GSE212701 | GEO

A BMP-controlled metabolic-epigenetic signaling cascade directs midfacial morphogenesis

Project description:To begin identifying potential downstream of BMP signaling involved in midline facial development, we conducted a transcriptome analysis comparing the expression profiles of control versus ca-Acvr1(A11);P0-Cre nasal process tissues.

2023-11-18 | GSE247729 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data