Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) and single-nuclei RNA-seq of flowering plants

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Solanum lycopersicum Brachypodium distachyon Solanum tuberosum Capsella rubella Populus trichocarpa Brassica oleracea Arabidopsis thaliana Oryza sativa Fragaria vesca Camelina sativa Thlaspi arvense Panicum hallii Arabidopsis lyrata Sorghum bicolor

PROVIDER: GSE299028 | GEO | 2025/06/05

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Fragaria vesca]

Project description:We applied multiplexed DNA affinity purification sequencing (multiDAP-seq) to profile the binding landscapes of 360 transcription factors (TFs) across ten flowering-plant genomes. Genomic DNA fragment libraries were assayed in 96-well plates against in vitro expressed HaloTag-fused TFs, generating nearly 3,000 genome-wide binding maps. These data provide a resource for identification of TF binding sites and comparative regulatory analyses, revealing deeply conserved TF-DNA interactions alongside lineage-specific rewiring events that underpin plant diversification. We also integreated these TF binding datasets with singe nuclei RNA-seq datasets produced from multiple tissues of five plant species to investigate the roles of TFs in driving cell type-specific gene expression patterns. The associated single nuclei RNA-seq datasets were submitted under BioProject ID PRJNA1262374.

2025-06-05 | GSE299001 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Arabidopsis thaliana]

2025-06-05 | GSE298983 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Solanum tuberosum]

2025-06-05 | GSE299026 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Solanum lycopersicum]

2025-06-05 | GSE299024 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Arabidopsis lyrata]

2025-06-05 | GSE298980 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Capsella rubella]

2025-06-05 | GSE298997 | GEO

Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Brassica oleracea]