Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mechanisms of association with amoeba hosts are shared by Paraburkholderia symbionts amid differential responses based on evolutionary history

ABSTRACT: In order to understand how Dictyostelium discoideum amoebas and Paraburkholderia symbionts establish symbiosis, we exposed amoebas to strains of symbionts from two clades and sequenced both host and symbiont RNA

ORGANISM(S): Dictyostelium discoideum Paraburkholderia agricolaris Paraburkholderia hayleyella Paraburkholderia bonniea

PROVIDER: GSE306028 | GEO | 2026/08/01

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Time series of host responses to symbiotic T6SS disruption in an amoeba-bacteria symbiosis

Project description:In order to understand host responses to symbiont strains with and without an intact symbiotic type 6 secretion system, we infected Dictyostelium discoideum with wildtype vs. ∆tssH Paraburkholderia bonniea and collected samples in a time series to capture the early stages of symbiotic association.

2025-01-06 | GSE276651 | GEO

Project description:The impacts of Paraburkholderia symbionts on the Dictyostelium discoideum microbiome

| PRJNA737516 | ENA

Photosymbiotic amoeba and their symbionts

Project description:Photosymbiotic amoeba and their symbionts

| PRJEB86908 | ENA

Fog Lichen Symbionts

Project description:Dual Symbiont Target Capture of Fog Lichen Symbionts

| PRJNA1248466 | ENA

<i>Paraburkholderia</i> Symbionts Display Variable Infection Patterns That Are Not Predictive of Amoeba Host Outcomes.

Project description: Not available

| S-EPMC7349545 | biostudies-literature

Heterologous Microarray Hybridization Between Vesicomyid Symbionts

Project description:The goal of this study was to use heterologous microarray hybridization to determine genomic content shared among different vesicomyid symbionts. These symbionts are closely related and can be thought of as different strains of bacteria, facilitating the use of heterologous microarray hybridization to determine genomic content. Keywords: comparative genomic hybridization Microarrays were built off the Ruthia magnifica genome and two replicate hybridizations to this organism were used as a baseline for comparisons. Genomic DNA from two other vesicomyid symbionts (Calyptogena kilmeri and C. pacifica symbionts) was also hybridized to the array with three biological replicates for each sample.

2010-05-15 | E-GEOD-13447 | biostudies-arrayexpress

Heterologous Microarray Hybridization Between Vesicomyid Symbionts

2008-11-28 | GSE13447 | GEO

Dictyostelium discoideum AX4

Project description:Dictyostelium discoideum

| PRJNA30667 | ENA

Transcriptomic response of Paraburkholderia busanensis P39 to Colletotrichum scovillei fungal biomass

Project description:This study investigated the transcriptomic response of Paraburkholderia busanensis P39 during exposure to fungal biomass of Colletotrichum scovillei KC05. RNA-seq was used to compare P39 grown alone with P39 exposed to fungal biomass, with three biological replicates per condition. The study aimed to identify transcriptional changes associated with fungal-biomass adaptation, nutrient scavenging, cell-envelope remodeling, regulatory responses, and interface-associated functions. Reads were aligned to the Paraburkholderia busanensis P39 genome represented by GenBank accessions CP058248 and CP058249.

2026-06-20 | GSE333284 | GEO

Transcriptomic response of grafted tomato seedlings leaves after root inoculations with rhizobacteria Azospirillum brasiliensis and Paraburkholderia graminis

Project description:Characterization of the transcriptomic responses of grafted tomato seedlings leaves after the root inoculations with the two beneficial microorganisms Paraburkholderia graminis and Azospirillum brasiliensis. Paraburkholderia graminis treatment led to a higher number of differentially expressed genes than Azospirillum brasiliensis, with a higher amount of up-regulated than down-regulated genes for both treatments. These DEGs were manly involved in response to oxidative stress, response to biotic and abiotic stress, water transport, regulation of transcription and hormones. Only few DEGs were shared among the two treatments, including genes involved in flowering time and in tolerance against abiotic stresses.

2022-10-16 | E-MTAB-11398 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data