Transcriptomics,Genomics

Dataset Information

39

[E-MTAB-550] Toxoplasma gondii RNASeq


ABSTRACT: Recent advances in high throughput sequencing methodologies allow the opportunity to probe in depth the transcriptomes of organisms including N. caninum and Toxoplasma gondii. In this project, we are using Illumina sequencing technology to analyze the transcriptome (RNA-Seq) of experimentally accessible stages (e.g. tachyzoites at different times points) of T. gondii VEG strain. The aim is to make comparative transcriptional landscape maps of Neospora and Toxoplasma at different time points at different life cycle stages and compare levels of expression of orthologous genes in these two organisms. ArrayExpress Release Date: 2011-02-08 Person Roles: submitter Person Last Name: Service Person First Name: Submission Person Mid Initials: Person Email: datahose@sanger.ac.uk Person Phone: Person Address: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom Person Affiliation: Wellcome Trust Sanger Institute Person Roles: Investigator Person Last Name: Reid Person First Name: Adam Person Mid Initials: Person Email: ar11@sanger.ac.uk Person Phone: 01223 834244 Person Address: Wellcome Trust Genome Campus,Hinxton,Cambridge. CB10 1SA UK Person Affiliation: Wellcome Trust Sanger Institute Person Roles: Project Coordinator Person Last Name: Sanders Person First Name: Mandy Person Mid Initials: J Person Email: mjs@sanger.ac.uk Person Phone: 01223 834244 Person Address: Wellcome Trust Genome Campus,Hinxton,Cambridge. CB10 1SA UK Person Affiliation: Wellcome Trust Sanger Institute Overall design: Experimental Design: development_or_differentiation_design Experimental Design: cell_line_design Experimental Design: in_vitro_design Experimental Design: co-expression_design Experimental Factor Name: DevelopmentalStage Experimental Factor Name: CellLine Experimental Factor Type: developmental stage Experimental Factor Type: cell_line

INSTRUMENT(S): Illumina Genome Analyzer II (Toxoplasma gondii)

SUBMITTER: ArrayExpress EBI  

PROVIDER: GSE30614 | GEO | 2011-07-14

SECONDARY ACCESSION(S): PRJNA144523

REPOSITORIES: GEO

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