Transcriptomics

Dataset Information

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Single-cell transcriptome profiling of Oryza sativa node I at booting, flowering, and grain filling stages


ABSTRACT: This dataset provides processed snRNA-seq gene expression data in the standard 10x Genomics CellRanger output format, including three core files: barcodes.tsv.gz (with quality-controlled nucleus-specific barcodes, matching expression matrix column order), features.tsv.gz (gene annotations: Ensembl ID, gene symbol, "Gene Expression" type, matching matrix row order), and matrix.mtx.gz (sparse MTX-format raw UMI count matrix, m×n dimensions where m=gene number, n=nucleus number, storing non-zero values as [gene_index][barcode_index][count]). These files together form a complete expression matrix and serve as fundamental input for downstream analysis via tools like Seurat and Scanpy.

ORGANISM(S): Oryza sativa Japonica Group

PROVIDER: GSE308757 | GEO | 2026/03/11

REPOSITORIES: GEO

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