Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of Basmati T-DNA insertional mutant lines

ABSTRACT: The aim of this study was to look for the changes at the transcriptome level caused by the same T-DNA cassette in three mutants of Basmati 370 with different phenotypes. The comparative analysis of differentially expressed genes was conducted individually and collectively for all three mutants.

ORGANISM(S): Oryza sativa Oryza sativa Indica Group

PROVIDER: GSE31248 | GEO | 2013/12/31

SECONDARY ACCESSION(S): PRJNA146057

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of Basmati T-DNA insertional mutant lines

Project description:The aim of this study was to look for the changes at the transcriptome level caused by the same T-DNA cassette in three mutants of Basmati 370 with different phenotypes. The comparative analysis of differentially expressed genes was conducted individually and collectively for all three mutants. RNA from Basmati mutants OsPE, Osoc and Ossl grown under optimal conditions were analyzed in two different biological replications (A and B) making total six samples.

2013-12-31 | E-GEOD-31248 | biostudies-arrayexpress

Transcription profiling of wild type Basmati 370 and its T-DNA insertional mutant OsAPC6.

Project description:The aim of this study was to look for the changes at the transcriptome level caused by the insertion of a T-DNA in mutant of Basmati 370 with dwarf phenotype. The comparative analysis of differentially expressed genes was conducted individually and collectively for both. RNA from wild type Basmati 370 and its mutant OsAPC6 grown under optimal conditions were analyzed in two different biological replications (A and B) making total four samples.

2013-12-31 | E-GEOD-31200 | biostudies-arrayexpress

Transcription profiling of wild type Basmati 370 and its T-DNA insertional mutant OsAPC6.

2013-12-31 | GSE31200 | GEO

Oryza sativa cultivar:Basmati 370

Project description:Basmati 370 Genome Sequencing

| PRJNA551546 | ENA

Insertional mutagenesis in the zoonotic pathogen Chlamydia caviae

Project description:3 strains of chlamydia caviae have been sequenced to verify their genome. These are WT and two mutants. The mutants have the genes sinC and incA disrupted.

2020-04-03 | E-MTAB-8415 | biostudies-arrayexpress

Whole genome transcriptome profiling of Pusa 1266 and Pusa Basmati 1 in panicle primordia stage

Project description:The aim of this study was to identify candidate genes responsible for grain number per panicle between a pair of rice varieties (Pusa 1266 and Pusa Basmati 1) by combining QTL analysis with expression analysis. Microarray analysis of RNA extracted from the panicle primordia showed 2741 differentially expressed genes. The differentially expressed genes were shortened to 18 on the basis of their occurance in the QTL region (responsible for grain number regulation) detected in RIL population derived from Pusa 1266 and Pusa Basmati 1. RNA from the stage '0' panicle primordia of Pusa 1266 and Pusa Basmati 1 were analysed in two different biological replications (A and B) making total four samples

2010-04-28 | E-GEOD-15912 | biostudies-arrayexpress

Baseline NSCLC cell lines compared to a reference mix consisting of 45 NSCLC cell lines

Project description:34 NSCLC cell lines were transcriptionally profiled against a reference mix of 45 NSCLC cell lines to look subtype specific differential gene expression

2013-01-18 | GSE43567 | GEO

Comparison of CNV in 6 ostosarcoma cell lines

Project description:We evaluated 6 established ostesarcoma cell lines. Copy Number Variation and loss-of-heterozygosity status were explored to look for similar patterns across cell lines

2023-11-22 | GSE240546 | GEO

Functional studies of the Yeast Mediator Tail Module Subunits

Project description:The yeast Mediator complex can be divided into three modules, designated Head, Middle and Tail. Tail comprises the Med2, Med3, Med5, Med15 and Med16 protein subunits, which are all encoded by genes that are individually non-essential for viability. In cells lacking Med16, Tail is displaced from Head and Middle. However, inactivation of MED5/MED15 and MED15/MED16 are synthetically lethal, indicating that Tail performs essential functions as a separate complex even when it is not bound to Middle and Head. We have used the N-Degron method to create temperature sensitive (ts) mutants in the Mediator tail subunits Med5, Med15 and Med16 to study the immediate effects on global gene expression when each subunit is individually inactivated, and when MED5/15 or MED15/16 are inactivated together.

2013-06-07 | GSE47712 | GEO

Oryza sativa cultivar:Dahrdun Basmati

Project description:Dahrdun Basmati Genome sequencing

| PRJNA551547 | ENA