Dataset Information

Methylation of the Cg12712415 Locus Suppresses TAK1 Expression to Mediate Immune Paralysis in Severe Pneumonia

ABSTRACT: Severe pneumonia lethality often arises not from excessive inflammation, but from subsequent immune system "paralysis" (immunoparalysis), a clinical challenge lacking specific biomarkers and effective therapies. Our study addressed this by identifying key epigenetic checkpoints driving immunoparalysis. Herein, we identify that DNA methylation at the Cg12712415 locus acts as an epigenetic switch to distinguish and predict secondary immunoparalysis in severe pneumonia patients. Mechanistically, DNMT3A specifically catalyzes this methylation, silencing transcription of the critical kinase TAK1 by blocking RNA polymerase II binding. TAK1 loss impairs monocyte/macrophage functions, disrupts intercellular crosstalk, induces CD8⁺ T cell exhaustion and regulatory T cell expansion, and causes systemic immunosuppression. Importantly, macrophage-derived exosome-mediated TAK1 delivery reversed immunoparalysis and improved survival in animal models. Our findings establish the "DNMT3A–Cg12712415–TAK1" axis as a novel regulatory pathway, provide a new immunoparalysis biomarker, and lay the foundation for an epigenetic-based targeted therapy.

ORGANISM(S): Homo sapiens

PROVIDER: GSE325517 | GEO | 2026/04/20

REPOSITORIES: GEO

ACCESS DATA

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Project description:Background Severe burn injury often leads to a state of immune paralysis, which markedly increases the risk of death from secondary bloodstream infection. However, the molecular mechanisms underlying post_x001E_burn immune paralysis, especially why it worsens infectious outcomes, remain poorly understood. This study aimed to elucidate the epigenetic regulatory mechanisms of post_x001E_burn immune paralysis and to evaluate the therapeutic potential of targeted intervention for secondary bloodstream infection. Methods A 30% total body surface area full_x001E_thickness (third_x001E_degree) burn model was established in C57BL/6J mice. Secondary bloodstream infection was induced by intravenous injection of Klebsiella pneumoniae or Pseudomonas aeruginosa on day 14 post_x001E_burn. Immune paralysis was assessed by monocyte phagocytosis, T_x001E_cell proliferation and IFN_x001E_γ secretion, and immune cell subset analysis. For mechanistic investigation, transcriptome sequencing was performed to identify key molecules, followed by bisulfite sequencing, molecular interaction assays, and in vivo CRISPRi/a_x001E_mediated knockdown or overexpression to delineate the epigenetic regulation and function. Finally, AAV_x001E_CRISPRi was used to knock down the target molecule in vivo, and its effects on immune paralysis and secondary infection outcomes were evaluated. Twenty_x001E_four severe burn patients and ten healthy volunteers were enrolled for clinical validation. Results Burn mice exhibited typical immune paralysis, characterized by decreased macrophage phagocytosis, impaired T_x001E_cell proliferation and IFN_x001E_γ secretion, increased M2/Treg ratios, and reduced pro_x001E_inflammatory cytokine levels. Mechanistically, PTPN6 was markedly up_x001E_regulated after burn and drove immune paralysis by suppressing the NF_x001E_κB and MAPK signaling pathways. Further investigation revealed that TET2 directly bound to the PTPN6 promoter and mediated its demethylation, leading to PTPN6 overexpression. In vivo knockdown of PTPN6 effectively alleviated immune paralysis, reduced bacterial load, attenuated multi_x001E_organ damage, and improved 14_x001E_day survival in burn mice (P < 0.01). Clinical sample analysis confirmed PTPN6 promoter demethylation, up_x001E_regulation of the TET2/PTPN6 axis, and immune dysfunction in peripheral blood of burn patients. Conclusions The key mechanism driving post_x001E_burn immune paralysis is “TET2_x001E_mediated PTPN6 promoter demethylation → PTPN6 up_x001E_regulation → suppression of NF_x001E_κB/MAPK pathways”. AAV_x001E_CRISPRi_x001E_mediated knockdown of PTPN6 effectively reverses immune paralysis and significantly improves the outcome of secondary bloodstream infection. This work provides a novel molecular basis for understanding post_x001E_burn immune dysfunction and identifies a potential therapeutic target for clinical intervention.

Dataset Information

Methylation of the Cg12712415 Locus Suppresses TAK1 Expression to Mediate Immune Paralysis in Severe Pneumonia

Dataset's files

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets