Transcriptomics

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Endometriosis-derived iPSCs reveal conserved stromal maturation and endocrine responsiveness


ABSTRACT: Endometriosis is a chronic, hormone-dependent disease characterized by altered endometrial stromal function, yet mechanistic and translational studies have been limited by the lack of tractable human model systems. Here, we establish an induced pluripotent stem cell (iPSC)–based platform derived from patients with endometriosis to model endometrial stromal differentiation in a controlled human context. Using a defined differentiation framework, endometriosis-derived iPSCs transition from pluripotency through mesenchymal commitment toward stromal-like states and acquire transcriptional hormone responsiveness. Trajectory-resolved transcriptomic analyses reveal coordinated repression of pluripotency and proliferative programs with induction of stromal lineage signatures. Benchmarking against independent bulk transcriptomic datasets demonstrated that in vitro–derived stromal cells progressively acquired gene expression profiles that resembled eutopic endometrial stromal programs in endometriosis. To explore potential functional consequences, conditioned media from iPSC-derived stromal cells was applied to THP-1 macrophage-like cells, revealing coordinated transcriptional reprogramming. Together, these results establish a patient-derived platform for modeling stromal differentiation and hormone responsiveness in a disease-relevant context. While this model captures key features of stromal identity, definitive assessment of disease-specific phenotypes will require future studies.

ORGANISM(S): Homo sapiens

PROVIDER: GSE328997 | GEO | 2026/08/26

REPOSITORIES: GEO

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