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The effect of zinc limitation on transcriptome expression in Pseudomonas protegens Pf-5

ABSTRACT: Transcriptomic profiling of Pseudomonas protegens Pf-5 comparing zinc-limited culture against zinc-amended culture in M9 minimal media

ORGANISM(S): Pseudomonas fluorescens Pseudomonas protegens Pf-5

PROVIDER: GSE32921 | GEO | 2011/10/13

SECONDARY ACCESSION(S): PRJNA146483

REPOSITORIES: GEO

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The effect of zinc limitation on transcriptome expression in Pseudomonas fluorescens Pf-5

Project description:Transcriptomic profiling of Pseudomonas fluorescens Pf-5 comparing zinc-limited culture against zinc-amended culture in M9 minimal media Two-condition experiment, non-zinc treated culture versus zinc sulphate supplemented culture. 3 biological replicates including 3 technical replicates for one of the biological replicate and 2 technical replicates for another biological replicate. Swap-dye experiments were performed

2011-10-12 | E-GEOD-32921 | biostudies-arrayexpress

The rpoS transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces

Project description:Transcriptomic profiling of an rpoS mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown on pea seed surfaces for 24h.

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Project description:Transcriptomic profiling of a gacA mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown on pea seed surfaces for 24h.

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Project description:Transcriptomic profiling of a gacA mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown on pea seed surfaces for 24h. Two-condition experiment, the gacA mutant compared to wild-type Pf-5 grown on pea seed surfaces for 24 h. There are three biological replicates and two flip-dye replicates for a total of six slides analyzed. Each slide contains four replicate spots per gene.

2012-12-31 | E-GEOD-38630 | biostudies-arrayexpress

The rpoS transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces

Project description:Transcriptomic profiling of an rpoS mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown on pea seed surfaces for 24h. Two-condition experiment, the rpoS mutant compared to wild-type Pf-5 grown on pea seed surfaces for 24 h. There are three biological replicates and two flip-dye replicates for a total of six slides analyzed. Each slide contains four replicate spots per gene.

2012-12-31 | E-GEOD-38631 | biostudies-arrayexpress

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Project description:Transcriptomic profiling of an rpoS mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown in nutrient broth supplemented with 1% glycerol to OD600=2.0-2.4 (early stationary phase). Two-condition experiment, the rpoS mutant compared to wild-type Pf-5 grown in nutrient broth supplemented with 1% glycerol to early stationary phase. There are three biological replicates and two flip-dye replicates for a total of six slides analyzed. Each slide contains three replicate spots per gene.

2012-12-31 | E-GEOD-38632 | biostudies-arrayexpress

The effect of Iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5: iron(III) chloride

Project description:Transcriptomic profiling of Pseudomonas fluorescens Pf-5 comparing iron(III) chloride supplemented grown culture against non-iron treated grown culture in M9 minimal media

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The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5: iron(II) chloride

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The effect of Iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5: iron(III) chloride

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2011-05-16 | E-GEOD-29320 | biostudies-arrayexpress

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