Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression analysis of Aspergillus nidulans AN1599 (PbcR) overexpression mutant

ABSTRACT: Investigation of whole genome gene expression level changes in Aspergillus nidulans AN1599 (PbcR) overexpression mutant, compared to the FGSC A4 wild-type strain. Overexpression of the Zn(II)2Cys6 –type transcription factor, AN1599.4 (PbcR, pimaradiene biosynthetic cluster regulator), activates a secondary metabolite gene cluster in Aspergillus nidulans. Activation of the pathway in Aspergillus nidulans lead to a production of ent-pimara-8(14),15-diene.

ORGANISM(S): Aspergillus nidulans Aspergillus nidulans FGSC A4

PROVIDER: GSE32954 | GEO | 2012/04/16

SECONDARY ACCESSION(S): PRJNA146471

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Expression analysis of Aspergillus nidulans AN1599 (PbcR) overexpression mutant

Project description:Investigation of whole genome gene expression level changes in Aspergillus nidulans AN1599 (PbcR) overexpression mutant, compared to the FGSC A4 wild-type strain. Overexpression of the Zn(II)2Cys6 M-bM-^@M-^Stype transcription factor, AN1599.4 (PbcR, pimaradiene biosynthetic cluster regulator), activates a secondary metabolite gene cluster in Aspergillus nidulans. Activation of the pathway in Aspergillus nidulans lead to a production of ent-pimara-8(14),15-diene. 12x135K array of two separate cultures of FGSC A4 and two separate cultures of oe:AN1599(PbcR) with three separate RNA extractions from each culture. Each 135K array measures expression level of 10,546 genes with 6 probes/transcript. In addition, the array format contains tiling probes for 36 longer transcripts. All probes are in duplicates, giving the total number of 137,562 probes per array.

2012-04-15 | E-GEOD-32954 | biostudies-arrayexpress

Expression analysis of Aspergillus nidulans OE::rsmA

Project description:Investigation of whole genome gene expression level changes in Aspergillus nidulans OE::rsmA compared to wild-type RDIT9.32 (veA). A twelve array study using total RNA recovered from six separate cultures of Aspergillus nidulans wild-type RDIT9.32 (veA) and six separate cultures of Aspergillus nidulans overexpressing rsmA (restorer of secondary metabolism A), using custom-designed, four-plex arrays. The experiment was divided into two runs. In the first run, three biological replicates each of Aspergillus nidulans wild-type RDIT9.32 (veA) and Aspergillus nidulans carrying a plasmid overexpressing rsmA under the control of the gpdA promoter were assayed. In the second run, three biological replicates each of Aspergillus nidulans wild-type RDIT9.32 (veA) and Aspergillus nidulans overexpressing rsmA at the native locus under the control of the gpdA promoter were assayed.

2012-01-17 | E-GEOD-34220 | biostudies-arrayexpress

Expression analysis of Aspergillus nidulans OE::rsmA

Project description:Investigation of whole genome gene expression level changes in Aspergillus nidulans OE::rsmA compared to wild-type RDIT9.32 (veA).

2012-01-17 | GSE34220 | GEO

GNPS Aspergillus nidulans FGSC A4 in different media

Project description:Aspergillus nidulans FGSC A4 5 grown in YPD, AF6 and EG:JM media

2022-07-18 | MSV000089906 | GNPS

Gene expression in Aspergillus nidulans on multiple nitrogen sources

Project description:Stranded RNA-seq of wild type Aspergillus nidulans during growth on a range of nitrogn sources

2021-05-06 | GSE145035 | GEO

Interaction of Aspergillus nidulans and Streptomyces rapamycinicus

Project description:Gene expression analysis of four different treatments of Aspergillus nidulans. reference line (A.nidulans), line A (A.nidulans + Streptomyces rapamycinicus), line B (A.nidulans + orsellinic acid), line C (A.nidulans + lecanoric acid)

2011-05-25 | GSE25266 | GEO

Suberin degradation by Aspergillus nidulans

Project description:The study aims essentially at the characterisation of suberin degradation mechanisms by Aspergillus nidulans, at a fundamental level. Suberin is an important protective barrier in plant, thus the study of its biodegradation significantly impacts on phytopatology. In addition, fungal suberin degrading enzymes might provide important insights to develop new waste management, bioremediation and biodeterioration prevention strategies.

2014-07-31 | GSE54427 | GEO

Transcriptome changes initiated by carbon starvation in Aspergillus nidulans (Microbiology-SGM, 2013, Vol:159)

Project description:Transcriptional profiling of Aspergillus nidulans comparing control (growing on glucose) and carbon starving cultures.

2020-04-08 | GSE42610 | GEO

Interaction of Aspergillus nidulans and Streptomyces rapamycinicus

2011-05-25 | E-GEOD-25266 | biostudies-arrayexpress

Aspergillus nidulans strain:FGSC A4 AMM05

Project description:Aspergillus nidulans FGSC A4 AMM05 Resequencing

| PRJNA442827 | ENA