Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression data from Arabidopsis thaliana WT (Ler), ebs and shl-2 mutants grown in SD conditions

ABSTRACT: We performed a tranascriptomic analysis of Ler, ebs and shl-2 plants in order to reveal targets whose transcription is regulated by EBS and SHL.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE33270 | GEO | 2014/10/14

SECONDARY ACCESSION(S): PRJNA149065

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Expression data from Arabidopsis thaliana WT (Ler), ebs and shl-2 mutants grown in short day conditions

Project description:We performed a tranascriptomic analysis of Ler, ebs and shl-2 plants in order to reveal targets whose transcription is regulated by EBS and SHL. The analysis was performed in WT plants (Ler), as well as mutants plants in which the expression of EBS and SHL was previously shown to be null, namely ebs and shl-2 mutant. To perform this study, plants were grown for 18 days under short days (SD) conditions (8h light, 16h darkness) in MS solid media. Three independent biological samples were hybridized separately.

2014-10-14 | E-GEOD-33270 | biostudies-arrayexpress

RNA-seq analysis of emf1, lhp1, ebs shl and ebs shl lhp1 transcriptomes in Arabidopsis thaliana

Project description:By RNA deep sequencing, around 11,000 genes were found to be differentially expressed in ebs shl lhp1 compared with wild type, and SHL and EBS, together with LHP1 and EMF1, co-regulate the expression of thousands of gene in Arabidopsis

2018-07-20 | GSE104370 | GEO

RNA-seq analysis of emf1, lhp1, ebs shl and ebs shl lhp1 transcriptomes in Arabidopsis thaliana

Project description:RNA-seq analysis of emf1, lhp1, ebs shl and ebs shl lhp1 transcriptomes in Arabidopsis thaliana

| PRJNA412461 | ENA

Arabidopsis thaliana

Project description:Expression data from Arabidopsis thaliana WT (Ler), ebs and shl-2 mutants grown in SD conditions

| PRJNA149065 | ENA

Arabidopsis thaliana strain:Ler

Project description:Arabidopsis thaliana accesion Ler genome

| PRJNA67133 | ENA

Arabidopsis thaliana strain:Ler

Project description:Arabidopsis thaliana strain:Ler Genome sequencing

| PRJNA156705 | ENA

Arabidopsis thaliana cultivar:Ler

Project description:Arabidopsis thaliana cultivar:Ler Raw sequence reads

| PRJNA609590 | ENA

Arabidopsis thaliana seedlings:early light regulated gene expression in Ler wildtype versus eid3 mutant

Project description:Transcriptional profiling of Arabidopsis thaliana Ler wildtype and eid3 (empfindlicher im dunkelroten Licht 3) mutant seedlings in darkness and 45 min after a red-light pulse.

2012-01-01 | GSE33856 | GEO

Expression data from inflorescence (unopened flower buds) of Arabidopsis thaliana - comparison between Ler and ask1 mutant

Project description:ARABIDOPSIS SKP1-LIKE1 (ASK1) protein is involved in regulating flower development. We have compared ask1 mutant floral transcriptome with wild-type Ler to identify the role of ASK1-containing E3 ubiquitin ligases in regulating flower transcriptome. In this dataset, we include the expression data obtained from Arabidopsis thaliana Ler and ask1 mutant flower buds. We identified 42 genes and 74 genes that are down-regulated and up-regulated, respectively.

2013-02-01 | GSE42841 | GEO

small RNA-seq of Ler. WT and Ler; 35S-HA-RICE1 D52A transgenic plant

Project description:We examined global miRNA profiles of 3-weeks old 35S-HA-RICE1 D52A transgeneic plants compared to Ler wild-type using illumina sequencing. We conclude that, in general, both miRNA and miRNA* expression levels are downregulated in catalytically-defective RICE1 transgenic plants compared to Ler wild type.

2017-05-02 | GSE96951 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data