Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

PIC-RNA-seq for primordial oocyte-specific local transcriptome analysis

ABSTRACT: To assess gene expression in oocytes beyond the embryonic stage, we used photo-isolation chemistry (PIC)-based mRNA profiling, which enabled selective analysis of primordial oocytes within postnatal day 2 (P2) and P10 ovaries.

ORGANISM(S): Mus musculus

PROVIDER: GSE333390 | GEO | 2026/08/18

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

PIC-RNA-seq for primordial oocyte-specific local transcriptome analysis

Project description:PIC-RNA-seq for primordial oocyte-specific local transcriptome analysis

| PRJNA1471021 | ENA

PIC high-depth transcriptomic profiling of distal and proximal regions of mouse limb-mesenchymal organoids

Project description:We performed photo-isolation chemistry (PIC)-based transcriptomic profiling of distal and proximal regions of mouse limb-mesenchymal organoids. UV-illuminated distal and proximal regions were captured from organoid sections using caged primers, amplified, indexed, and sequenced. The dataset contains distal and proximal regional transcriptomes used to identify genes enriched in the digit-like distal tip versus proximal region of limb-mesenchymal organoids.

2026-05-26 | GSE331258 | GEO

High-depth spatial transcriptome analysis by photo-isolation chemistry

Project description:We established a transcriptome profiling method coupled with photo-isolation chemistry (PIC) that allows the determination of expression profiles specifically from photo-irradiated regions of interest.

2021-06-16 | GSE143413 | GEO

Photo-isolation chemistry for high-resolution and deep spatial transcriptome with tissue sections

Project description:We established a high-depth spatial transcriptomics technology, photo-isolation chemistry (PIC; Honda, et al., Nat Commun, 2021), which is able to isolate gene expression profiles only from photo-irradiated region out of whole tissues. In the original protocol, only the fresh-frozen sections were available, but we have now optimized it applicable to formalin-fixed frozen and formalin-fixed paraffin sections. Here, we provide an updated protocol of PIC.

2022-05-04 | GSE195459 | GEO

Melanoma SK-Mel-103 cell line : control vs. treated with pIC/pIC+PEI

Project description:Transcriptional profiling of the melanoma SK-mel-103 comparing control untreated cells with cells treated with 1ug/ml of polyinosine-polycytidylic acid (pIC) or 1ug/ml of pIC with polyethyleneimine (PEI) for 4 or 10 hours. Keywords: Treatment Four-condition experiment, SK-Mel-103 untreated vs. SK-Mel-103 treated with pIC/pIC+PEI at 4 and 10 hours. One replicate per array.

2010-04-08 | E-GEOD-14445 | biostudies-arrayexpress

Foreskin Melanocyte: control vs. treated with pIC/pIC+PEI

Project description:Transcriptional profiling of Foreskin Melanocyte comparing control untreated cells with cells treated with 1ug/ml of polyinosine-polycytidylic acid (pIC) or 1ug/ml of pIC with polyethyleneimine (PEI) for 4 or 10 hours.

2010-02-01 | GSE16337 | GEO

Melanoma SK-Mel-103 cell line : control vs. treated with pIC/pIC+PEI

2010-01-01 | GSE14445 | GEO

Mediator orchestrates PIC assembly

Project description:Mediator orchestrates PIC assembly

| PRJEB7387 | ENA

Phytophthora ipomoeae PIC 99167

Project description:Phytophthora ipomoeae PIC 99167 genome sequencing

| PRJEA52689 | ENA

Transcription profiling of human BM-MSC expanded from p2 until p10 and monitored by FACS, proliferation kinetics and differentiation ability

Project description:hBM-MSC were expanded from p2 until p10 and monitored by FACS, proliferation kinetics and differentiation ability;ÃÂµA analysis were performed p2/p5 (n=10)and p5/p10 (n=5) to examine if the genetic background of hBM-MSC is changeing during their high-grade expansion;

2007-06-09 | E-MARS-6 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data