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RNA-seq of THP1 cells with SRSF10 knockdown

ABSTRACT: To investigate the downstream transcriptional regulatory network of the RNA-binding protein SRSF10 in acute myeloid leukemia (AML), we performed RNA sequencing (RNA-seq) in THP1 cells following SRSF10 knockdown. THP1 cells were transduced with lentivirus expressing shRNA targeting SRSF10 (shSRSF10) or a non-targeting control shRNA (shNC). Knockdown efficiency was confirmed by RT-qPCR and Western blot prior to RNA extraction. Total RNA was isolated from three biological replicates per condition (shNC and shSRSF10), and cDNA libraries were constructed using the NEBNext Ultra RNA Library Prep Kit. Paired-end 150 bp sequencing was performed on an Illumina platform. Raw reads were processed through quality filtering with fastp and aligned to the human reference genome (hg38) using STAR. Gene-level quantification was performed with featureCounts, and differentially expressed genes were identified using edgeR with thresholds of |log2FC| > 1 and adjusted P < 0.05. This dataset enables the identification of SRSF10-regulated genes and provides insights into the role of SRSF10 in AML cell survival.

ORGANISM(S): Homo sapiens

PROVIDER: GSE336266 | GEO | 2026/06/24

REPOSITORIES: GEO

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