Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptonal profiling of 5 dpf pdcd7/cx20 pd1215 zebrafish mutants and WT siblings

ABSTRACT: For this experiment, we sought to characterize gene expression changes and intron splicing events in 5 dpf pdcd7/cx20 pd1215 mutants relative to WT siblings.

ORGANISM(S): Danio rerio

PROVIDER: GSE341872 | GEO | 2026/08/03

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptonal profiling of 5 dpf pdcd7/cx20 pd1215 zebrafish mutants and WT siblings

Project description:Transcriptonal profiling of 5 dpf pdcd7/cx20 pd1215 zebrafish mutants and WT siblings

| PRJNA1504382 | ENA

Zebrafish ectonucleoside triphosphate/diphosphohydrolase 5 (entpd5) mutants compared to siblings at 7 dpf

Project description:This microarray was performed in attempt to find genes that are related to the presence of entpd5 during embryonic development Embryos were raised in standard E3 medium at 28 degrees Celcius. At 6 dpf mutant were separated from siblings by an in vivo skeletal staining (incubating embryos 5 minutes in 0.05% alizarin red in E3 medium where after they are extensively washed with E3 medium) as mutants fail to mineralize their skeleton. At 7 dpf, total RNA from (n=30) entpd5 mutants versus sibling embryos was isolated using the Rnaesy mini kit (Qiagen) according to the manufactures protocol.

2012-11-29 | E-GEOD-35737 | biostudies-arrayexpress

RNAseq on uhrf1 zebrafish mutant larvae at 5 dpf compared to phenotypically normal siblings

Project description:In this study, we performed RNA-seq on 5 dpf whole larvae of uhrf1-hi272 mutants and phenotypically wild-type siblings to determine changes in the transcriptomic profile.

2020-12-01 | GSE160708 | GEO

Transcriptional profiling of 3 dpf and 5 dpf WT zebrafish intestinal epithelial cells

Project description:For this experiment, we analyzed gene expression changes and intron splicing events in the WT zebrafish intestine at two developmental stages (3 dpf and 5 dpf). To perform this analysis, we collected > 125 M paired end reads from total RNA isolated from purified cldn15la+ intestinal epithelial cells at each time point.

2026-08-02 | GSE341768 | GEO

Transcriptomic profiling of Tg(fabp10a:hUHRF1-EGFP)high zebrafish livers and control siblings at 5 dpf

Project description:Overexpression of high levels of human UHRF1 tagged with EGFP (hUHRF1-EGFP)high in zebrafish hepatocytes induces cellular senescence by 5 days post fertilization (dpf) and hepatocellular carcinoma by 15-20 dpf. The goal of this study is to compare the transcriptome profile of zebrafish livers with (hUHRF1-EGFP)high overexpression compared to WT siblings. RNAseq was performed on RNA extracted from pools of microdissected liveres by using RiboZero libary prep to capture all transcripts, including transposable elements, that are expressed in the livers.

2023-03-21 | GSE227735 | GEO

RNA-seq of microglia from 3-dpf siblings, mafba and mafbb single mutant and DMut zebrafish

Project description:In order to search for the downstream target genes of Mafba and Mafbb, we isolated microglia (3 cells per sample) from 3-dpf zebrafish brain of siblings, mafba and mafbb single mutants and DMut under Tg(mpeg1:DsRedx) transgenic background (3 samples per genotype), respectively, and then performed RNA sequencing.

2022-09-20 | GSE213126 | GEO

RNAseq on uhrf1 zebrafish mutant larvae at 5 dpf compared to phenotypically normal siblings

Project description:RNAseq on uhrf1 zebrafish mutant larvae at 5 dpf compared to phenotypically normal siblings

| PRJNA674048 | ENA

RNA-seq of microglia from 3-dpf siblings, mafba and mafbb single mutant and DMut zebrafish

Project description:RNA-seq of microglia from 3-dpf siblings, mafba and mafbb single mutant and DMut zebrafish

| PRJNA879221 | ENA

Transcriptomic profiling of Tg(fabp10a:hUHRF1-EGFP)high zebrafish livers and control siblings at 5 dpf

Project description:Transcriptomic profiling of Tg(fabp10a:hUHRF1-EGFP)high zebrafish livers and control siblings at 5 dpf

| PRJNA946726 | ENA

Transcriptional profiling of 3 dpf and 5 dpf WT zebrafish intestinal epithelial cells

Project description:Transcriptional profiling of 3 dpf and 5 dpf WT zebrafish intestinal epithelial cells