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Leaf gene expression profile of rice during sunset

ABSTRACT: A continuous gene expression profiling of leaves was performed at regular interval during the sunset period to understand the changes of transcriptional program in the rice plant grown under natural field conditions in response to solar radiation.

ORGANISM(S): Oryza sativa Oryza sativa Japonica Group

PROVIDER: GSE36044 | GEO | 2012/12/03

SECONDARY ACCESSION(S): PRJNA151771

REPOSITORIES: GEO

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Leaf gene expression profile of rice during sunset

Project description:A continuous gene expression profiling of leaves was performed at regular interval during the sunset period to understand the changes of transcriptional program in the rice plant grown under natural field conditions in response to solar radiation. At 78 days after transplanting, leaf samples corresponding to the uppermost fully expanded leaves were collected at 10-min intervals from 5:00 PM until 8:00 PM. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

2012-12-03 | E-GEOD-36044 | biostudies-arrayexpress

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Project description:A continuous gene expression profiling of leaves was performed at regular interval during the sunrise period to understand the changes of transcriptional program in the rice plant grown under natural field conditions in response to solar radiation. At 79 days after transplanting, leaf samples corresponding to the uppermost fully expanded leaves were collected at 10-min intervals in two replicates from 3:50 AM until 6:00 AM. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

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Diurnal and circadian gene expression profile of root throughout the entire growth of rice in the field

Project description:A continuous gene expression profiling of roots was performed at regular interval during a 48-hr period in 2 different growth stages to characterize the diurnal and circadian gene expression profile of rice growth under natural field conditions.

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Continuous gene expression profile of leaf at nighttime throughout the entire growth of rice in the field

Project description:A continuous gene expression profiling of leaves was performed during nighttime at regular interval from transplanting until harvesting to understand the changes of transcriptional program and physiological state throughout entire growth of the rice plant under natural field conditions. The uppermost fully-expanded leaf in the main stem corresponding to the 1st leaf until 83 days after transplanting (DAT) and the flag leaf from them on were sampled in two replicates at 12:00 midnight at 7- day intervals encompassing 17 different growth stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

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Diurnal and circadian gene expression profile of leaf throughout the entire growth of rice in the field

Project description:A continuous gene expression profiling of leaves was performed at regular interval during a 48-hr period in 9 different growth stages from transplanting until harvesting to characterize the diurnal and circadian gene expression profile of rice and to understand the transcriptional program and physiological state throughout entire the growth under natural field conditions. The uppermost fully expanded leaf in the main stem was collected at 2-hr intervals during a 48-hr period at 9 different growth stages encompassing the vegetative, reproductive and ripening stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

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