Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Reproducibility of global gene expression in rat lung

ABSTRACT: We used microarrays to assess the reproducibility of global gene expression in rat lung from experiments performated by 2 individuals. Expression analyses in 01matsu and 01suzu rat lung. Both prepared under the same conditions, and the comparison is between the reproducibility of the experiment as performed by two different individuals.

ORGANISM(S): Rattus norvegicus

PROVIDER: GSE36109 | GEO | 2012/02/28

SECONDARY ACCESSION(S): PRJNA152987

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Reproducibility of global gene expression in rat lung

Project description:We used microarrays to assess the reproducibility of global gene expression in rat lung from experiments performated by 2 individuals. Expression analyses in 01matsu and 01suzu rat lung. Both prepared under the same conditions, and the comparison is between the reproducibility of the experiment as performed by two different individuals. Affymetrix® GeneChip® Rat Genome 230 2.0 Array was used to analyze total RNA from rat lung.

2012-02-28 | E-GEOD-36109 | biostudies-arrayexpress

Next generation sequencing analysis of primary rat lung fibroblast, primary rat lung alveolar type 2 cell and a novel 10-4A rat lung cell line transcriptomes

Project description:Purpose: We report the application of single-molecule-based sequencing technology for high-throughput profiling of a novel 10-4A rat lung fibroblast cell line and compared the transcriptome to freshly isolated primary rat lung fibroblasts and freshly isolated primary rat lung alveolar type 2 cells.

2020-09-18 | GSE155743 | GEO

Rigor and Reproducibility of Acoustofluidics of saliva from healthy donors

Project description:This is for Rigor and Reproducibility study to demonstrate the reproducibility of AFS SOP for EV separation, RNA isolation, and RNA analysis by using saliva samples from healthy individuals. Blinded saliva samples have been processed by two independent AFS operators for EV separation and subjected to miRNA-seq analysis. EV-associated miRNA seqeunces were used as a monitoring tool for Rigor and Reproducibility of AFS process between operators.

2023-12-29 | GSE235349 | GEO

lung microbiota in rat

Project description:lung microbiota in rat Raw sequence reads

| PRJNA755451 | ENA

Gene expression profiles in rat lung following intratracheal instillation with impurity-free single-wall carbon nanotubes

Project description:To further development of our gene expression approach to assess the effects of manufactured nanomaterials at the transcriptional level, we have employed whole genome microarray expression profiling as a discovery platform to identify genes with the potential to distinguish characterization of physicochemical properties of impurity-free single-wall carbon nanotubes (SWCNTs). We have prepared two types of dispersed the SWCNTs, namely relatively small bundles and a short linear shape (CNT-1) and large bundles and a long linear shape (CNT-2), and attempted to characterize time-dependent changes in the gene expression of lung tissues until 90 days after intratracheal instillation with SWCNTs suspensions at 0.4 mg injected dose per rat.

2014-09-17 | GSE61483 | GEO

Rat lung cells' gene expression difference compared with that of the adult cells including rat BMC and PEF cells

Project description:Rat somatic lung cell had different gene expression level compared with that of the adult cells including rat bone marrow cells(BMC) and rat primary ear fibroblasts(PEF). This difference gave the rat somatic lung cell unique characteristics which could then be compared with the rat iPS cells by genes comparison to show the gene expression difference between rat somatic lung cells and rat iPS cells.

2009-04-01 | GSE13573 | GEO

Chronic developmental hypoxia alters rat lung immune cell transcriptomes during allergic airway inflammation

Project description:It is unknown how hypoxia exposure beginning at conception and maintained through adulthood, chronic developmental hypoxia (CDH), effects immune cell populations in the lung. This study utilized single cell RNA sequencing in a rat model of CDH combined with a model of OVA-induced asthma or a non-allergic model to assess the effect of CDH on lung immune cell populations in the context of allergic airway disease and in a non-allergic state.

2023-02-01 | GSE211925 | GEO

Evaluation of technical (array-to-array) reproducibility of L. vannamei microarray

Project description:Five aliquots of the same RNA sample were labeled and hybridized in parallel to the L. vannamei microarray, in order to assess the technical reproducibility of the tool Keywords: technical validation

2006-06-01 | GSE4954 | GEO

Rat & M. fortis - lung and liver

Project description:Rat & M. fortis - lung and liver

| PRJNA129285 | ENA

The rat lncRNA microarray analysis of the 8 samples from control and NNK treatment group

Project description:In order to assess the alteration in lncRNA expression in rat lung carcinogenesis induced by NNK, we determined the lncRNA expression profiles in 3 rat lung tumor samples and matched normal lung tissues and 2 blood samples from the control and NNK treatment group in the 95th week using Arraystar Rat lncRNA Microarray.

2015-05-19 | GSE68967 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data