Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression diversity in Phytophthora ramorum

ABSTRACT: Expression diversity of P. ramorum isolates belonging to the NA1 clonal lineage growing on solid CV8 was examined. It was found that although all the analyzed isolates belonged to a single clonal lineage, expression patterns were distinctive between isolates originating from coast live oak and California bay laurel.

ORGANISM(S): Phytophthora ramorum

PROVIDER: GSE36178 | GEO | 2012/03/01

SECONDARY ACCESSION(S): PRJNA152919

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Expression diversity in Phytophthora ramorum

Project description:Expression diversity of P. ramorum isolates belonging to the NA1 clonal lineage growing on solid CV8 was examined. It was found that although all the analyzed isolates belonged to a single clonal lineage, expression patterns were distinctive between isolates originating from coast live oak and California bay laurel. Global expression patterns of 13 isolates originating from coastal live oak and California bay laurel was investigated. No biological replicates were generated. The sequenced strain Pr102 was included. Gene models Phytophthora ramorum v1.0 were used to construct NimbleGen 72K x4 custom arrays.

2012-03-01 | E-GEOD-36178 | biostudies-arrayexpress

Expression diversity of Phytophthora ramorum from canyon live oak

Project description:Expression diversity of P. ramorum isolates belonging to the NA1 clonal lineage growing on solid CV8 was examined. We found that phenotypes and transcriptomes change when isolates were passing through oak trees.

2014-10-24 | GSE62643 | GEO

Phytophthora ramorum

Project description:Phytophthora ramorum NA1 raw sequence reads

| PRJNA401646 | ENA

Phytophthora ramorum strain:NA1

Project description:Phytophthora ramorum NA1 raw sequence reads

| PRJNA287845 | ENA

Project description:Phytophthora ramorum NA1 California population

| PRJNA558041 | ENA

Phytophthora ramorum isolate:PR-102

Project description:Phytophthora ramorum NA1 genome sequencing and assembly

| PRJNA738483 | ENA

Phytophthora ramorum strain:NA1

Project description:Phytophthora ramorum strain:NA1 Transcriptome or Gene expression

| PRJNA485340 | ENA

Phytophthora ramorum

Project description:Expression diversity of Phytophthora ramorum from canyon live oak

| PRJNA264624 | ENA

Phytophthora ramorum isolate:PR-102

Project description:Alternate assembly of Phytophthora ramorum NA1 genome sequencing and assembly

| PRJNA746000 | ENA

Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs: Phytophthora ramorum small RNA

Project description:Deep sequencing of small RNAs from three Phytophthora species, P. infestans, P. ramorum and P. sojae, was done to systematically analyze small RNA-generating components of Phytophthora genomes. We found that each species produces two distinct small RNA populations that are predominantly 21- or 25-nucleotides long. We present evidence that 25-nucleotide small RNAs are short-interfering RNAs that silence repetitive genetic elements. In contrast, 21-nucleotide small RNAs are associated with inverted repeats, including a novel microRNA family, and may function at the post-transcriptional level. Phytophthora ramorum mycelium small RNAs were sequenced and aligned to the P. ramorum genome for analysis. *Raw data files (fastq) are unavailable for this study.

2013-10-21 | E-GEOD-50031 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data