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Evolutionary principles of modular gene regulation in Yeasts

ABSTRACT: Comparative time-series expression analysis of growth curves through carbon depletion in the ascomycete yeasts

ORGANISM(S): Saccharomyces bayanus Lachancea waltii Saccharomyces cerevisiae Nakaseomyces glabratus Schizosaccharomyces japonicus Saccharomyces mikatae Saccharomyces paradoxus Yarrowia lipolytica Schizosaccharomyces pombe Vanderwaltozyma polyspora Lachancea kluyveri NRRL Y-12651 Debaryomyces hansenii Lachancea kluyveri Candida albicans Naumovozyma castellii Kluyveromyces lactis

PROVIDER: GSE36253 | GEO | 2013/06/20

SECONDARY ACCESSION(S): PRJNA153069

REPOSITORIES: GEO

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Evolutionary principles of modular gene regulation in Yeasts

Project description:Comparative time-series expression analysis of growth curves through carbon depletion in the ascomycete yeasts.

2013-04-25 | GSE38478 | GEO

Evolutionary principles of modular gene regulation in Yeasts

Project description:Comparative time-series expression analysis of growth curves through carbon depletion in the ascomycete yeasts Each of the following species-specific, growth curve derived samples competitively hybed to their own mid-log samples: lag phase, late log, diauxic shift, post-shift, plateau

2013-06-20 | E-GEOD-36253 | biostudies-arrayexpress

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Project description:Comparative time-series expression analysis of growth curves through carbon depletion in the ascomycete yeasts. Each of the following species-specific, growth curve derived samples competitively hybed to their own mid-log samples: lag phase, late log, diauxic shift, post-shift, plateau.

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Project description:The standard genetic code is almost universal, and the evolutionary factors that caused a few organisms to deviate from it are poorly understood. We report that three independent changes of the genetic code occurred during the evolution of budding yeasts, each of which was a reassignment of the codon CUG from leucine to another amino acid. We identify five major yeast clades that differ by translating CUG as either Ser (2 clades), Ala (1 clade), or Leu (2 clades). The newly discovered Ser2 clade is in the final stages of transition from one genetic code to another. It appears to use only a novel tRNASer (tSCAG) to translate CUG codons, but the gene for the ancestral tRNALeu (tLCAG) is still intact in most species in the clade, consistent with the ‘ambiguous intermediate’ theory. We propose that the three parallel changes of the genetic code in yeasts were not driven by natural selection in favor of their effects on the proteome, but by selection to eliminate the ancestral tLCAG, possibly in response to a killer toxin.

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