Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cdka mutants-cdka mutants

ABSTRACT: rs10-06_cdka - cdka mutants - difference in global transcript in mutants with an affected cell cycle progression - compare wild type plants with mutant plants that show a reduced activity of CDKA1, the key cell cycle regulator in Arabidopsis thaliana

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE36275 | GEO | 2012/03/20

SECONDARY ACCESSION(S): PRJNA153111

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

cdka mutants-cdka mutants

Project description:rs10-06_cdka - cdka mutants - difference in global transcript in mutants with an affected cell cycle progression - compare wild type plants with mutant plants that show a reduced activity of CDKA1, the key cell cycle regulator in Arabidopsis thaliana 6 dye-swap - wt vs mutant comparison

2012-03-20 | E-GEOD-36275 | biostudies-arrayexpress

Transcription profiling of Arabidopsis FNR1 mutants from different ecotypes

Project description:The mechanism by which plants regulate channeling of photosynthetically derived electrons into different areas of chloroplast metabolism remains obscure. In higher plants, these electrons are made accessible to stromal enzymes, or cyclic electron flow, as reduced ferredoxin (Fd), or NADPH. We investigated how the specific loss of an Arabidopsis (Arabidopsis thaliana) ferredoxin:NADPH reductase (FNR) isoprotein affected channeling of photosynthetic electrons into NADPH and Fd dependent metabolism. Affymetrix gene chip comparison of transcript changes in these mutants against two different ecotype backgrounds indicates that stress signaling is perturbed, and experiments revealed that the mutants are more susceptible to oxidative stress. Experiment Overall Design: We isolated arabidopsis mutants of the FNR1 gene in different ecotypes, extracted RNA from these and respective wild type plants and hybridised it to Affymetrix microarrays

2008-10-26 | E-GEOD-9402 | biostudies-arrayexpress

FNR1 mutation against ecotype variation

Project description:The mechanism by which plants regulate channeling of photosynthetically derived electrons into different areas of chloroplast metabolism remains obscure. In higher plants, these electrons are made accessible to stromal enzymes, or cyclic electron flow, as reduced ferredoxin (Fd), or NADPH. We investigated how the specific loss of an Arabidopsis (Arabidopsis thaliana) ferredoxin:NADPH reductase (FNR) isoprotein affected channeling of photosynthetic electrons into NADPH and Fd dependent metabolism. Affymetrix gene chip comparison of transcript changes in these mutants against two different ecotype backgrounds indicates that stress signaling is perturbed, and experiments revealed that the mutants are more susceptible to oxidative stress. Keywords: mutant wild type transcript profile comparison

2008-10-11 | GSE9402 | GEO

Arabidopsis thaliana ecotype Col-0 versus T-DNA mutant sir1-1

Project description:Arabidopsis thaliana Col-0 plants were compared to sir1-1 T-DNA insertion mutants to investigate transcript levels of sulfur metabolism related genes under standard conditions.

2010-03-12 | GSE20670 | GEO

Transcriptome analysis of fry2 mutants-Transcriptome analysis of fry2 mutants

Project description:ra08-01_cpl1 - transcriptome analysis of fry2 mutants - Compare the transcriptome of 2 mutants affected in FRY2 (fry2-1 and 14-5sep) to control plants. - The Arabidopsis 14-5sep mutant was isolated as overexpressing a NII::LUC construct fusing a tobacco nitrite reductase gene with the luciferase reporter gene. This mutant overexpressed also the endogenous Arabidopsis nitrite reductase gene. Map-based cloning showed that the 14-5 sep mutant was affected in the FRY2 gene. Transciptome analysis was performed on both the 14-5sep and the fry2-1 mutants and their respective controls (either the C24 ecotype containing the RD29A::LUC transgene for fry2-1 or the Col0 accession containing the NII::LUC transgene for the 14-5sep mutant) to analyze which genes are differentially expressed in the mutants versus control plants. Keywords: gene knock out

2009-04-15 | GSE11174 | GEO

Arabidopsis pvip mutants

Project description:Transcriptional comparison of Arabidopsis thaliana pvip1;pvip2 RNAi double mutants against Col-0 wildtype. Tissue used: whole rosettes of 4-week-old plants grown under short-day conditions (8h light; 20oC). 3 biological replicates for each. Control = Col-0 and mutant = pvip1;pvip2. PVIP = Potyvirus-VPg-interacting protein (Dunoyer et al. 2004 J. Virol. 78: 2301-2309).

2009-12-11 | GSE19341 | GEO

Seedling transcriptomes of Arabidopsis thaliana HULK mutants

Project description:We produced RNA-seq reads from messenger RNA isolated from aerial seedling tissue for Arabidopsis thaliana mutants in the HULK gene family. The read data were generated with biological replication (two replicates). The resulting RNA-seq data provide a resource to assess the function of HULK genes in the control of downstream gene expression in A. thaliana. Examination of RNA transcript levels in HULK T-DNA mutants (and mutant combinations therein) in Arabidopsis thaliana.

2015-01-01 | E-GEOD-54125 | biostudies-arrayexpress

Transcription profiling of leaves from wild type, fou2 mutant and tpc1-2 mutant Arabidopsis plants

Project description:Compare gene expression in the resting leaves of Arabidopsis thaliana WT with the mutants fou2 and tpc1-2. To analyse the contribution of the fou2 and tpc1-2 mutations in Arabidopsis thaliana to gene expression, transcript levels in the resting leaves of Arabidopsis were measured using 4 weeks-old plants grown in control conditions (long day).

2007-07-02 | E-MEXP-1095 | biostudies-arrayexpress

Transcriptome analysis of fry2 mutants-Transcriptome analysis of fry2 mutants

2009-04-15 | E-GEOD-11174 | biostudies-arrayexpress

Transcriptional profiling of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana

Project description:Methyl CpG Binding (MBD) proteins are a class of protein that binds with methylated DNA. In the model plant Arabidopsis thaliana there are 13 MBD proteins are there. To understand the gene regulation we performed microarray analysis of mutants of three genes (atmbd4, atmbd6 and atmbd11). Ten day old seedlings of these three mutant were compared with the wild type plants grown in same condition.

2014-07-09 | GSE59133 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data