Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sequence specific recognition of RNA hairpins by the SAM domain of Vts1

ABSTRACT: Identifying transcripts that are associated with the post transcriptional regulator Vts1 in yeast by co-immuno precipitation. Keywords: RNA pulldown, Co-IP

ORGANISM(S): Saccharomyces cerevisiae

PROVIDER: GSE3741 | GEO | 2006/03/24

SECONDARY ACCESSION(S): PRJNA93907

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Nematostella vectensis argonautes

Project description:We performed Immuno precipitation using antibodies against Nematostella vectensis Argonauts proteins (i.e AGO1 and AGO2). Samples of the IP were analyzed by LC-MSMS in order to idetify the argonautes and prove antibodies specifity.

2020-10-14 | PXD011644 | Pride

Identification of flg22-responsive BSU1 phosphorylation sites

Project description:To investigate flg22-induced posttranslational modification of BSU1 family proteins, we performed metabolic Stable Isotope Labeling In Arabidopsis followed by Immuno-Precipitation and Mass Spectrometry (SILIA IP-MS) analysis, with the isotopes switched in replicate experiments.

2023-03-10 | PXD016283 | Pride

Genome wide profiling of RNA polymerase III in Saccharomyces cerevisiae

Project description:Genome wide mapping of RNA polymearase III binding sites in Saccharomyces cerevisiae under normal growth and nutrient starved condition using ChIP-seq. Chromatin Immuno-precipitation (ChIP) was performed for FLAG tagged version of pol III subunit RPC128 after crosslinking the log-phase cells with formaldehyde. MOCK and IP DNA was sequenced and coverage of pol III was calculated at each base of the genome.

2013-06-21 | GSE39566 | GEO

Genome wide profiling of RNA polymerase III in Saccharomyces cerevisiae

2013-06-21 | E-GEOD-39566 | biostudies-arrayexpress

Transcriptional Regulation by Cullin Ubiquitin Ligases

Project description:We determined the genomic location of ubiquitin and CUL1 by chromatin-immuno precipitation.

2020-08-18 | GSE147426 | GEO

FUS KO mRNA sequencing and anti-FUS RNA immunoprecipitation sequencing

Project description:The aim of our study is to identify the role of FUS in shaping the transcriptome. RNA-seq of two FUS KO clones was performed and compared to wt; for each, four replicates were sequenced. RNA molecules associated with the FUS protein were determined by means of a RNA immuno-precipitation, followed by high-throughput sequencing. Total RNA was used as a control. SH-SY5Y cells were used for both experiments. RNA-seq: 4 wt samples, 4 A4 KO samples, 4 A5 KO samples. RIP-seq: 1 input control sample, 3 anti-FUS IP replicates.

2016-06-13 | E-GEOD-71812 | biostudies-arrayexpress

The chromatin factors SET-26 and HCF-1 oppose the histone deacetylase HDA-1 in longevity and gene regulation in C. elegans

Project description:In this study, a GFP-tagged version of the protein HCF-1 was immuno-precipitated from C. elegans lysates of the strain IU171 and co-purifying proteins were identified by LC-MS/MS. As a negative control, the same immuno-precipitation was conducted from wild-type (strain N2) worms that did not carry a HCF-1::GFP transgene.

2024-01-29 | PXD047509 | Pride

Histone H3K18ac ChIP-seq in U2OS cells

Project description:Chromatin immuno-precipitation using anti-H3K18ac antibodies in U2OS cells.

2016-04-27 | E-MTAB-3695 | biostudies-arrayexpress

Ebp1-selective ribosome profiling analysis of Neuro2a cells with Ebp1-immuno-precipitation

Project description:We perform Selective Ribosome Profiling (SeRP) analysis of mouse Neuro2a neuronal cultures with Ebp1-immuno-precipitation in biological duplicate to assess the translation-specific function of Ebp1

2021-03-23 | GSE157361 | GEO

m6A-RIP-seq of heat shock-exposed HeLa cells upon HSATIII knockdown

Project description:To investigate the effect of HSATIII lncRNA on m6A modification, we performed m6A-RIP(RNA immuno precipitation) RNA-seq from heat shock-exposed HeLa cells upon HSATIII knockdown.

2021-04-30 | GSE164200 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data