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Expression data from OsRP1L1-overexpressing plant leaf in japonica rice (cv. Ishikari-shiroge (I-S))

ABSTRACT: A novel rice NBS-LRR gene was cloned and overexpressed to explore its function in bacterial blight (BB) resistance. Due to its similarity to the Rp1 gene in maize (Zea mays), it was designated as OsRP1L1. We used microarrays to detail the global reprogram of gene expression in OsRP1L1-overexpressing plants.

ORGANISM(S): Oryza sativa Oryza sativa Japonica Group

PROVIDER: GSE39767 | GEO | 2012/08/01

SECONDARY ACCESSION(S): PRJNA171689

REPOSITORIES: GEO

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Expression data from OsRP1L1-overexpressing plant leaf in japonica rice (cv. Ishikari-shiroge (I-S))

Project description:A novel rice NBS-LRR gene was cloned and overexpressed to explore its function in bacterial blight (BB) resistance. Due to its similarity to the Rp1 gene in maize (Zea mays), it was designated as OsRP1L1. We used microarrays to detail the global reprogram of gene expression in OsRP1L1-overexpressing plants. To find out pathways and genes related to this defense-related gene, microanalysis were carried out on OsPR1L1-overexpressing plants. Three independent replicates were perfomed for overexpressing plants and wild type plants.

2012-07-31 | E-GEOD-39767 | biostudies-arrayexpress

Expression data from leaf of plant overexpressing OsXa5 in japonica rice (cv. Ishikari-shiroge (I-S))

Project description:A candidate gene was cloned and overexpressed to explore its potential function in bacterial blight (BB) resistance. Due to it was the susceptible allele of xa5 gene in rice, it was designated as OsXa5. We used microarrays to detail the global reprogram of gene expression in OsXa5-overexpressing plants.

2013-11-30 | GSE52836 | GEO

Expression data from infected (Xanthomonas oryzae pv. Oryzae (P10)) leaf in japonica rice (cv. Y73)

Project description:Previously, we successfully introduce the bacterial blight resistance trait from Oryza meyeriana into O. sativa using asymmetric somatic hybridization with O. meyeriana as the donor species. After years of breeding, a progeny named Y73 was generated with recurrent parent O. sativa L. ssp. japonica cv. Dalixiang, and it shows high resistance to broad-spectrum of bacterial blight pathogens Xanthomonas oryzae pv. Oryzae (Xoo). However, the resistance mechanism of Y73 is remain undiscovered. To provide insights into the high resistance phenotype of these plants, we examined the transcriptome response in leaves of Y73 to the bacterial blight infection in this study. Xoo inoculated and mock inoculated rice plants were grown in growth room and the global analysis of gene expression events in rice leaves at 24 hours post inoculation (hpi) were analyzed using Affymetrix Rice GeneChip microarrays. We used microarrays to detail the global programme of gene expression underlying Xoo infection in rice Y73.

2012-02-27 | GSE36093 | GEO

Expression data from infected (Xanthomonas oryzae pv. Oryzae (P10)) leaf in japonica rice (cv. Y73)

2012-02-27 | E-GEOD-36093 | biostudies-arrayexpress

Zea mays subsp. mays Transcriptome or Gene expression

Project description:Zea mays subsp. mays Transcriptome or Gene expression Atlas.

2012-09-13 | E-MTAB-4342 | biostudies-arrayexpress

Expression data from LCM-captured Zea mays root cells after challenge with Meloidogyne incognita

Project description:The differentiation of specialized feeding sites in Zea mays root cells in response to nematode infestation involves substantial cellular reprogramming of host cells that is not well characterized at the molecular level. Expression data was generated from Zea mays root cells undergoing giant cell formation due to nematode infestation and from non-infested control root cells. Cells were laser captured 14 and 21 days after infestation.

2012-04-28 | GSE37556 | GEO

Whole transcriptome analysis of coding and non-coding RNAs associated with Spodoptera frugiperda feeding in Zea mays

Project description:We report the application of whole transcriptome sequencing technology for high-throughput profiling of coding and non-coding RNAs associated with Spodoptera frugiperda feeding in Zea mays. 4,366 mRNAs and 233 lncRNAs were differentially expressed during Spodoptera frugiperda feeding in Zea mays. Our data contribute to the understanding of the function of coding and non-coding RNAs in the regulation of plant-insect interactions.

2023-11-21 | GSE247976 | GEO

Transcriptome of 3 developmental stages of Colletotrichum graminicola during infection of Zea mays leaf sheaths

Project description:Transcriptome of 3 developmental stages of Colletotrichum graminicola during infection of Zea mays leaf sheaths

2012-06-04 | GSE34632 | GEO

Maize proteome and transcriptome atlas

Project description:An atlas of RNA and protein expression maps across a diverse set of developmental tissues from Zea mays

2016-08-18 | GSE50191 | GEO

Pseudomonas putida KT2440 cells: control vs. 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA)

Project description:Transcriptome profiling of Pseudomonas putida KT2440 comparing cells exposed for 1 hour to DIMBOA from maize (Zea mays) to unexposed cells

2012-07-09 | GSE36489 | GEO

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