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Transgenerational profiling of small non-coding RNAs in C.elegans RSD mutants

ABSTRACT: Attempt to identify progressive changes in small non-coding RNA levels in C.elegans lacking RSD-2 or RSD-6.

ORGANISM(S): Caenorhabditis elegans

PROVIDER: GSE40457 | GEO | 2013/06/01

SECONDARY ACCESSION(S): PRJNA174089

REPOSITORIES: GEO

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Transgenerational profiling of small non-coding RNAs in C.elegans RSD mutants

Project description:Attempt to identify progressive changes in small non-coding RNA levels in C.elegans lacking RSD-2 or RSD-6. Small non-coding RNA (18-30nt) was extracted from animals the indicated number of generations after homozygosity was established

2013-06-01 | E-GEOD-40457 | biostudies-arrayexpress

Changes in small RNAs upon Viral infection of C.elegans

Project description:Attempt to identify small non-coding RNAs that change in levels as a result of viral infection of C.elegans

2013-06-01 | GSE41057 | GEO

Rsd timecourse

Project description:The gene expression profile of MC4100 delta rsd with pACYC Rsd and pACYC delta BS plasmids has been analysed using whole genome oligonucleotide microarrays. Control RNA was isolated from 50ml LB cultures of MC4100 delta rsd strain with pACYC delta BS. Experimental RNA was isolated from 50ml LB cultures of MC4100 delta rsd with pACYC Rsd, for each growth condition (OD600 = 0.4: log phase, 0.9: late log phase, 1.1: transition phase, ST(OD600 = >2.0): stationary phase). The experiments performed replicate. Keywords: timecourse (overproduction of Rsd)

2007-10-22 | GSE5981 | GEO

Expression analysis of Caenorhabditis elegans Bristol N2 rsd-2 and rsd-6 single mutants at 25°C and 20°C

2013-06-01 | GSE40459 | GEO

Changes in small RNAs upon Viral infection of C.elegans

Project description:Attempt to identify small non-coding RNAs that change in levels as a result of viral infection of C.elegans Small non-coding RNA (18-30nt) was extracted from animals either infected with Orsay virus or uninfected as indicated.

2013-06-01 | E-GEOD-41057 | biostudies-arrayexpress

Expression analysis of Caenorhabditis elegans Bristol N2 rsd-2 and rsd-6 single mutants at 25Â°C and 20Â°C

Project description:Investigation of whole genome gene expression level changes in early generation Caenorhabditis elegans Bristol N2 rsd-2 and Bristol N2 rsd-6 single mutants, compared to late-generation strains at 25Â°C and 20Â°C A six chip study using total RNA recovered from two separate alleles of Caenorhabditis elegans Bristol N2 rsd-2 and one allele Bristol N2 rsd-6 , in which the effects of transgeneration aging are studied in early generation animals and late generation animals at the restrictive temperature of 25Â°C and the permissive temperature, 20Â°C.

2013-06-01 | E-GEOD-40459 | biostudies-arrayexpress

Transgenerational changes in small RNA profiles of C.elegans mutants lacking PRG-1

Project description:An attempt to identify small non-coding RNAs that change with increasing generations after becoming homozygous for the loss of PRG-1

2013-06-01 | GSE40572 | GEO

Transgenerational changes in small RNA profiles of C.elegans mutants lacking PRG-1

Project description:An attempt to identify small non-coding RNAs that change with increasing generations after becoming homozygous for the loss of PRG-1 Small non-coding RNA (18-30nt) was extracted from animals the indicated number of generations after homozygosity was established

2013-06-01 | E-GEOD-40572 | biostudies-arrayexpress

Growth-phase dependent regulation of transcription by Rsd and 6S RNA

Project description:This entry refers to transcriptome analysis of five E. coli strains: E. coli K-12 MG1655, single deletions of rsd, ssrS, and rpoS, as well as a double deletion of rsd and ssrS, in five growth phases.

2016-06-10 | GSE74809 | GEO

Growth-phase dependent regulation of transcription by Rsd and 6S RNA

2016-06-10 | E-GEOD-74809 | biostudies-arrayexpress

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