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Profile of H4K16 acetylation in undifferentiated ES cells [Illumina BeadArray data]

ABSTRACT: Level of H4K16ac on highest and lowest expressed genes in undifferentiated ES cells

ORGANISM(S): Mus musculus

PROVIDER: GSE43100 | GEO | 2013/08/23

SECONDARY ACCESSION(S): PRJNA185199

REPOSITORIES: GEO

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Profile of H4K16 acetylation in undifferentiated ES cells [Illumina BeadArray data]

Project description:Level of H4K16ac on highest and lowest expressed genes in undifferentiated ES cells 3 biological replicates in undifferentiated ES cells

2013-08-23 | E-GEOD-43100 | biostudies-arrayexpress

Gain and loss of H4K16 acetylation during ES cell differentiation [NimbleGen ChIP-chip]

Project description:H4K16ac is gained on hox loci and lost on pluripotency genes upon differentiation ChIP on chip over hox loxi and pluripotency genes for H4K16ac in undifferentiated ES cells and after 3 days of retinoic acid treatment

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Gain and loss of H4K16 acetylation during ES cell differentiation [Agilent arrays]

Project description:Genome wide gain and loss of H4K16ac upon differentiation correlated with changes in expression. Gene expression in undifferentiated ES cells, and cells after 3 days of differentiation in retinoic acid. 3 biological replicates with two technical replicates were performed for each sample.

2013-08-23 | E-GEOD-43101 | biostudies-arrayexpress

Gain and loss of H4K16 acetylation during ES cell differentiation [Agilent arrays]

Project description:Genome wide gain and loss of H4K16ac upon differentiation correlated with changes in expression.

2013-08-23 | GSE43101 | GEO

Gain and loss of H4K16 acetylation during ES cell differentiation [NimbleGen ChIP-chip]

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H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction [NimbleGen array]

Project description:We report that acetylation of H4K16 is a new marker of active enhancers and that some enhancers are marked by H3K4me1, MOF and H4K16ac but not by acetylated H3K27 or p300, suggesting that they are novel p300-independent regulatory elements. ChIP on chip over neuronal and control genes for H4K16ac in undifferentiated 46c (sox1-gfp) ES cells and for 5 day differentiated FACS sorted Neural Progenitor Cells differentiated with NB27 and Neuro2 medium supplements

2013-08-23 | E-GEOD-47762 | biostudies-arrayexpress

H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction (I) [ChIP-Seq]

Project description:We report that acetylation of H4K16 is a new marker of active enhancers and that some enhancers are marked by H3K4me1, MOF and H4K16ac but not by acetylated H3K27 or p300, suggesting that they are novel p300-independent regulatory elements. ChIP-seq for H4K16 acetylation in undifferentiated ES cells, and cells after 3 days of retinoic acid differentiation, along with MNase digested input for both samples

2013-08-23 | E-GEOD-43102 | biostudies-arrayexpress

H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction [Agilent array]

Project description:We report that acetylation of H4K16 is a new marker of active enhancers and that some enhancers are marked by H3K4me1, MOF and H4K16ac but not by acetylated H3K27 or p300, suggesting that they are novel p300-independent regulatory elements. Gene expression in undifferentiated 46c (sox1-gfp) ES cells, and gfp FACS sorted cells after 5 days of differentiation to neural progenitor cells with NB27 and Neuro2 medium supplements. 3 biological replicates were performed for each sample.

2013-08-23 | E-GEOD-47716 | biostudies-arrayexpress

H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction (II) [ChIP-Seq]

Project description:We report that acetylation of H4K16 is a new marker of active enhancers and that some enhancers are marked by H3K4me1, MOF and H4K16ac but not by acetylated H3K27 or p300, suggesting that they are novel p300-independent regulatory elements. ChIP-seq for H4K16 acetylation in undifferentiated 46c(sox1-gfp) ES cells, and FACS sorted day 5 Neural Progenitor Cells (differentiated with NB27 and Neuro2 medium supplements) , along with MNase digested input for both samples

2013-08-23 | E-GEOD-47761 | biostudies-arrayexpress

PHF20 readers link methylation of histone H3K4 and p53 with H4K16 acetylation

Project description:PHF20 is a core component of the lysine acetyltransferase complex MOF-NSL that produces the major epigenetic mark, H4K16ac, and is necessary for transcriptional regulation and DNA repair, however the role of PHF20 in the complex remains elusive. Here, we report on functional crosstalk between epigenetic readers of PHF20. We show that the PHF20 PHD finger recognizes dimethylated lysine 4 of histone H3 (H3K4me2) and represents first example of a native PHD reader selective for this modification. Biochemical and structural analyses illuminate the molecular mechanism underlying this function and explain the preference of Tudor2, another reader in PHF20, for dimethylated p53. Binding of the PHD finger to H3K4me2 is required for histone acetylation, accumulation of PHF20 at target genes, and transcriptional activation. Together, our findings establish a novel PHF20-mediated link between MOF HAT, p53 and H3K4me2-dependent cellular events and suggest a model for rapid spreading of H4K16ac-encriched open chromatin.

2017-05-22 | GSE82115 | GEO

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