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Studies of target genes for signal transduction pathways (using a Ras1-, a Cdc42- and a Gap1-mutant) in the basidiomycete Schizophyllum commune.

ABSTRACT: Transcriptome changes associated with signal transduction mutants were analysed in order to identify targets of the distinct pathways of Ras1, Cdc42 and Gap1. Two monokaryons (12-43 and 4-39), a dikaryon (W22 x 12-43), a constitutive active Ras1 mutant (T2G12V, monokaryon), a Cdc42 mutant (G12V, monokaryon) and a ∆gap1 x ∆gap1 dikaryon (F15 x F28, deletion of Gap1) were analyzed for that purpose.

ORGANISM(S): Schizophyllum commune

PROVIDER: GSE43965 | GEO | 2013/02/01

SECONDARY ACCESSION(S): PRJNA188239

REPOSITORIES: GEO

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Studies of target genes for signal transduction pathways (using a Ras1-, a Cdc42- and a Gap1-mutant) in the basidiomycete Schizophyllum commune.

Project description:Transcriptome changes associated with signal transduction mutants were analysed in order to identify targets of the distinct pathways of Ras1, Cdc42 and Gap1. Two monokaryons (12-43 and 4-39), a dikaryon (W22 x 12-43), a constitutive active Ras1 mutant (T2G12V, monokaryon), a Cdc42 mutant (G12V, monokaryon) and a M-bM-^HM-^Fgap1 x M-bM-^HM-^Fgap1 dikaryon (F15 x F28, deletion of Gap1) were analyzed for that purpose. With microarray analysis mRNA expression in different mutants of the basidiomycete S. commune was analyzed. Genes which show regulation in the comparison either of the two monokaryons 12-43 and 4-39 (for Ras2 and Cdc42 mutant) or the dikaryon W22 x 12-43 (for Gap1 x Gap1 dikaryon) have been eliminated from other comparisons as stage-specific (mono- or dikaryon) differences. Two biological replicate samples were analyzed for each condition.

2013-02-01 | E-GEOD-43965 | biostudies-arrayexpress

Study of mating type genes and their roles in mating interactions of the basidiomycete Schizophyllum commune

2012-06-15 | GSE26401 | GEO

Study of mating type genes and their roles in mating interactions of the basidiomycete Schizophyllum commune

Project description:Transcriptome changes associated with mating interactions were performed in order to identify signaling components and targets of pheromone response. Two monokaryons (S. commune 12-43 and 4-39), a dikaryon (W22 x 12-43), both semi-compatible mating interactions (Aon: W22 x 4-39; Bon, flat: W21 x 4-39), and different S. commune pheromone receptor recipient strains (Vbar2f, Vbar2t) were analyzed for that purpose. In addition, a S. commune strain showing the thin-phenotype (W22-thin) was investigated to figure out the role of Thn1 in mating. With microarray analysis mRNA expression in different mating interactions of the basidiomycete S. commune was analyzed. Genes which show regulation in the comparison of the two monokaryons 12-43 and 4-39 has been eliminated from other comparisons as strain specific differences. Two biological or technical replicate samples were analyzed for each condition.

2012-06-14 | E-GEOD-26401 | biostudies-arrayexpress

Study of heavy metal stress in the basidiomycete Schizophyllum commune

Project description:Transcriptome changes associated with metal stress were investigated in order to identify tolerance mechanisms and the impact on inositol signaling. The wild type S. commune 12-43 was compared with 12-43 grown with addition of contaminated seepage water (HSW) and another wild type strain W22 grown with 0.01 mM Cd.

2021-04-20 | GSE172373 | GEO

Schizophyllum commune

Project description:Studies of target genes for signal transduction pathways (using a Ras1-, a Cdc42- and a Gap1-mutant) in the basidiomycete Schizophyllum commune.

| PRJNA188239 | ENA

Inositol Signaling in the Basidiomycete Fungus Schizophyllum commune.

Project description: Not available

| S-EPMC8230515 | biostudies-literature

Effect of light on gene expression in Schizophyllum commune

Project description:In order to study the effect of light on gene expression in Schizophyllum commune, genome wide gene expression was analysed in 4-day-old monokaryotic and dikaryotic wild type colonies, grown either in light or in darkness. 4 samples: - monokaryon, grown for 4 days in the light - monokaryon, grown for 4 days in the dark - dikaryon, grown for 4 days in the light - dikaryon, grown for 4 days in the dark RNA was obtained from 3 biological replicates and pooled

2013-08-12 | E-GEOD-23533 | biostudies-arrayexpress

Inositol signaling in the basidiomycete fungus Schizophyllum commune

Project description:Intracellular signaling is conserved in eukaryotes to allow for response to extracellular signals and to regulate development and cellular functions. In fungi, inositol phosphate signaling has been shown to be involved in growth, sexual reproduction, and metabolic adaptation lacking, however, reports of mushroom forming fungi so far. In Schizophyllum commune, an inositol monophosphatase has been found up-regulated during sexual development. The enzyme is crucial for inositol cycling where it catalyzes the last step of inositol phosphate metabolism restoring the inositol pool from the monophosphorylated inositol monophosphate. We overexpressed the gene in this model basidiomycete and verified its involvement in cell wall integrity and intracellular trafficking. Strong phenotypes in mushroom formation and cell metabolism were evidenced by proteome analyses. In addition, altered inositol signaling was shown to be involved in tolerance towards cesium and zinc, and increased metal tolerance towards cadmium, associated with induced expression of kinases and repression of phosphatases within the inositol cycle. The presence of the heavy metals Sr, Cs, Cd, and Zn lowered intracellular calcium levels. We could develop a model integrating inositol signaling in the known signal transduction pathways governed by Ras, G-protein coupled receptors, cAMP and elucidate different roles in development.

2021-07-01 | PXD026465 | Pride

Transcriptome and functional analysis of mating in the basidiomycete Schizophyllum commune.

Project description: Not available

| S-EPMC3346423 | biostudies-literature

A central role for Ras1 in morphogenesis of the basidiomycete Schizophyllum commune.

Project description: Not available

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