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Acinetobacter oleivorans DR1 : Wild type treated with tetracycline vs. harboring plasmid (pAST2) treated with tetracycline

ABSTRACT: Transcriptional profiling of A. oleivorans DR1 cells comparing tetracylcline-treated wild type cells with tetracycline-treated DR1 cell harboring pAST2.

ORGANISM(S): Acinetobacter oleivorans DR1

PROVIDER: GSE44428 | GEO | 2013/02/21

SECONDARY ACCESSION(S): PRJNA189955

REPOSITORIES: GEO

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Acinetobacter oleivorans DR1 : Wild type treated with tetracycline vs. harboring plasmid (pAST2) treated with tetracycline

Project description:Transcriptional profiling of A. oleivorans DR1 cells comparing tetracylcline-treated wild type cells with tetracycline-treated DR1 cell harboring pAST2. To identify genes important for tetracycline stress response in A. oleivorans DR1 and A. oleivorans DR1 harboring pAST2, the cells were grown to exponential phase (OD600 ~0.4) and treated with tetracycline (1μg/ml) over a period of 15 min.

2013-02-21 | E-GEOD-44428 | biostudies-arrayexpress

Acinetobacter oleivorans DR1 : Wild-type cell harboring plasmid (pAST2) in nutrient media

2014-02-22 | GSE55239 | GEO

Acinetobacter oleivorans DR1 : Wild-type cell harboring plasmid (pAST2) in nutrient media

Project description:Transcriptional profiling of A. oleivorans DR1 cells harboring pAST2. Plasmid pAST2 is a tetracycline-resistance plasmid which was isolated from activated sludge (Hong et al., 2014). The complete plasmid sequence was deposited in the National Center for Biotechnology Information (NCBI) GenBank under accession number KC734561 [PMID: 24337108]. Acquisition of TC resistance through plasmid uptake is related to loss of biological fitness and affected host gene expression in oil-degrading soil bacterium, Acinetobacter oleivorans DR1. To identify genes in A. oleivorans DR1 harboring pAST2, the cells were grown to exponential phase (OD600 ~0.4) and total RNA was extracted using an RNeasy Mini kit (Qiagen, USA) following the manufacturer's instructions.

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Project description:Transcriptional profiling of A. oleivorans DR1 cells comparing control untreated wild type cells with norfloxacin treated wild type cells.

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Acinetobacter oleivorans DR1: paraquat-treated and phenazine methosulfate-treated

Project description:Transcriptional profiling of A. oleivorans DR1 cells in the presence of paraquat and phenazine methosulfate

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Acinetobacter oleivorans DR1 : Control vs. norfloxacin treated

Project description:Transcriptional profiling of A. oleivorans DR1 cells comparing control untreated wild type cells with norfloxacin treated wild type cells. To identify genes important for norfloxacin stress response in A. oleivorans DR1, the cells were grown to exponential phase (OD600 ~0.5) and treated with norfloxacin (4?g/ml) over a period of 15 min.

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Acinetobacter oleivorans DR1: paraquat-treated and phenazine methosulfate-treated

Project description:Transcriptional profiling of A. oleivorans DR1 cells in the presence of paraquat and phenazine methosulfate To identify genes involved in oxidative stress response in A. oleivorans DR1, cells were grown to exponential phase (OD600 ~0.4) and treated with paraquat (1 mM) and phenazine methosulfate (200 μM) over a period of 15 min. Total RNA was extracted using an RNeasy Mini kit (Qiagen, USA) following the manufacturer's instructions.

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Acinetobacter oleivorans DR1 : Cell treated Kanamycin 4 µg/ml in nutrient media

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Acinetobacter oleivorans DR1 : Cell treated Ampicillin 100 µg/ml in nutrient media

Project description:Transcriptional profiling of A. oleivorans DR1 treated Ampicillin 100 µg/ml for 15min .

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RNA-seq of Acinetobacter oleivorans DR1: on hydrogen peroxide

Project description:Transcriptional profiling of A. oleivorans DR1 treated low and high level of hydrogen peroxide for 15min .

2018-01-17 | GSE108860 | GEO