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Gene expression profiles in growth-inhibition rice seedling implanted by the low-energy N+ beam

ABSTRACT: Knowledge of genes expression related to the growth-inhibition biological effects induced by low-energy N+ in plant. This study investigated the differentially expressed genes (DEGs) related to the growth-inhibition biological effects induced by low-energy N+ in plant by RNA-seq. Ion fluences (40Kev, curren intensity=3mA) of 1×1017N+/cm2，2×1017N+/cm2，4×1017N+/cm2，6×1017N+/cm2，8×1017N+/cm2 were used in the ion-implanted experiments. Biological effects with growht-inhibition were arised from the samples implanted by the ion fluences of 6×1017N+/cm2，8×1017N+/cm2 because of the inhibition of seedling height and root length. We sequenced mRNA from these damaged rice seedlings and others. We identified 776 transcripts as reliable DEGs at the growth inhibition sample campared with the control.The pathway enrichment analysis of these 776 DEGs showed that pathway of photosynthesis - antenna proteins was down-regulated. Meanwhile transcription factor analysis showed that genes related to AUX/IAA were also down-regulated. This study were contributed to a better understanding of molecular events responsible for adaption to the implantation of low-energy ion beam in plant.

ORGANISM(S): Oryza sativa Japonica Group

PROVIDER: GSE45908 | GEO | 2016/04/09

SECONDARY ACCESSION(S): PRJNA196691

REPOSITORIES: GEO

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