Transcriptomics

Dataset Information

29

Streptococcus pneumoniae D39 spxB- mutant vs. D39 wild-type


ABSTRACT: Comparison of the Streptococcus pneumoniae D39 spxB- mutant vs D39. For DNA microarray analysis, D39 wild-type and two independently obtained D39spxB- mutants were grown as four, two and two biological replicates, respectively, in Glc-M17 under semi-aerobic conditions and harvested at an OD595 of approximately 0.25 (mid-exponential). The RNA of both D39spxB- strains was compared to D39 and the combined data was analyzed. All other procedures regarding microarray analyses were done as described before. A gene was considered differentially expressed when the fold change was ≥ 2, ≤ 0.5, with a Bayes p ≤ 0.00001 and when at least 7 measurements were available. Overall design: One condition design comparision of two strains including a dye swap.

INSTRUMENT(S): Streptococcus pneumoniae, multi strain 7k version7 (condensed)

ORGANISM(S): Streptococcus pneumoniae D39  

SUBMITTER: Jetta Bijlsma  

PROVIDER: GSE45971 | GEO |

SECONDARY ACCESSION(S): PRJNA214485

REPOSITORIES: GEO

Similar Datasets

2013-08-08 | E-GEOD-45971 | ArrayExpress
2014-10-28 | E-GEOD-61649 | ArrayExpress
2014-06-20 | E-GEOD-58182 | ArrayExpress
| GSE58183 | GEO
| GSE86008 | GEO
2014-06-20 | E-GEOD-58181 | ArrayExpress
2015-04-23 | E-GEOD-65547 | ArrayExpress
2015-04-23 | E-GEOD-65548 | ArrayExpress
2011-07-10 | E-GEOD-30414 | ArrayExpress
| GSE66558 | GEO