Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of transcript starts in Desulfovibrio alaskensis G20

ABSTRACT: 5' RNASeq of mRNA from G20 in defined lactate/sulfate media (LS4D)

ORGANISM(S): Oleidesulfovibrio alaskensis G20

PROVIDER: GSE49484 | GEO | 2013/08/03

SECONDARY ACCESSION(S): PRJNA214074

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Identification of transcript starts in Desulfovibrio alaskensis G20

Project description:5' RNASeq of mRNA from G20 in defined lactate/sulfate media (LS4D) 5' RNASeq of a single sample

2013-08-03 | E-GEOD-49484 | biostudies-arrayexpress

High-resolution analysis of RNA expression in Desulfovbrio alaskensis G20

Project description:High-resolution tiling analysis of the D. alaskensis G20 transcriptome in lactate/sulfate media, both rich (LS) and defined (LS4D)

2012-07-19 | GSE39471 | GEO

Comparative transcriptional analysis of Desulfovibrio alaskensis G20, a choline utilization regulator and LysX

Project description:Expression data for Desulfovibrio alaskensis strain G20 and mutants in regulator proteins grown on lactate sulfate media and then pelleted and transferred to another media when they reached stationary phase. The Choline mutant was transferred to lacte/sulfate minimal media and choline/sulfate minimal media. The LysX mutant was transferred to minimal media with lysine and rich media. G20 was transferred to minimal media, choline/sulfate minimal media, lactate/choline/sulfate minimal media, minimal media with lysine, and rich media. We aimed to confirm or expand the regulons of each of the transposon interupted regulator mutants and compare gene expression responses of the regulators in different growth conditions.

2013-08-03 | GSE49528 | GEO

Comparative transcriptional analysis of Desulfovibrio alaskensis G20, a choline utilization regulator and LysX

2013-08-03 | E-GEOD-49528 | biostudies-arrayexpress

Comparative transcriptional analysis of Desulfovibrio alaskensis G20 and regulator proteins mutants

2013-08-03 | GSE49529 | GEO

Comparative transcriptional analysis of Desulfovibrio alaskensis G20 and regulator proteins mutants

Project description:Expression data for Desulfovibrio alaskensis strain G20 and mutants in regulator proteins grown on lactate sulfate media. Pellets collected at mid-log growth phase. We aimed to confirm or expand the predicted regulons of each of the transposon interrupted regulator mutants. 12 samples were collected: 10 regulator mutants, 1 mutant in a secretory protein and 1 control sample Desulfovibrio alaskensis G20. 1 replicate for each condition.

2013-08-03 | E-GEOD-49529 | biostudies-arrayexpress

Comparative transcriptional analysis of Desulfovibrio alaskensis G20 and mutants in regulator proteins grown in minimal media

2013-08-03 | GSE49527 | GEO

Comparative transcriptional analysis of Desulfovibrio alaskensis G20 and mutants in regulator proteins grown in minimal media

Project description:Expression data for Desulfovibrio alaskensis strain G20 and mutants in regulator proteins grown on lactate sulfate media. Pellets collected at mid-log growth phase. We aimed to confirm or expand the predicted regulons of each of the transposon interrupted regulator mutants. 8 samples were collected: 7 regulator mutants and 1 control sample Desulfovibrio alaskensis G20. 1 replicate for each condition.

2013-08-03 | E-GEOD-49527 | biostudies-arrayexpress

Evidence-based annotation of genes and transcripts in Desulfovibrio vulgaris Hildenborough (RNA-Seq)

Project description:5' RNASeq of mRNA from DvH in defined lactate/sulfate media (LS4D)

2011-05-27 | GSE29559 | GEO

Influence of growth rate and methanogenic partner on syntrophic metabolism of Desulfovibrio G20 (comparative transcriptional analysis of Desulfovibrio G20 grown under various syntrophic conditions relative to respiratory growth)

Project description:Expression data for Desulfovibrio alaskensis strain G20 grown on lactate in sulfate-limited monoculture and syntrophic coculture with Methanococcus maripaludis or Methanospirillum hungatei in chemostats at a low growth rate of 0.027h-1. 7 samples of Desulfovibrio alaskensis strain G20 grown in syntrophic coculture on lactate with either Methanococcus maripaludis (4 replicates) or Methanospirillum hungatei (3 replicates), and 5 samples of sulfate-limited monoculture growth of strain G20 on lactate.

2013-05-02 | E-GEOD-46547 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data