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Genome-wide profiling of H3K4me3 and H3K27me3 enrichment and mRNA levels in young leaves of Arabidopsis thaliana

ABSTRACT: Chromatin and RNA were extracted from young A. thaliana Col-0 rosette leaves. Chromatin immunoprecipitation experiments were performed using commercially available antibodies and analyzed by Illumina sequencing (ChIP-seq). Transcriptome data were generated by RNA-seq.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE50636 | GEO | 2014/01/27

SECONDARY ACCESSION(S): PRJNA218138

REPOSITORIES: GEO

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Genome-wide profiling of H3K4me3 and H3K27me3 enrichment and mRNA levels in young leaves of Arabidopsis thaliana

Project description:Chromatin and RNA were extracted from young A. thaliana Col-0 rosette leaves. Chromatin immunoprecipitation experiments were performed using commercially available antibodies and analyzed by Illumina sequencing (ChIP-seq). Transcriptome data were generated by RNA-seq. ChIP-seq analysis of H3K4me3 and H3K27me3 enrichment profiles in 2 biological replicates. RNA-seq analysis of mRNA levels in 1 biological replicate.

2014-01-27 | E-GEOD-50636 | biostudies-arrayexpress

Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabidopsis lyrata

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Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabidopsis lyrata

Project description:Chromatin, DNA and RNA were extracted from young A. alpina Pajares primary stem leaves. Chromatin and DNA methylation immunoprecipitation experiments were performed using commercially available antibodies and analyzed by Illumina sequencing (ChIP-seq and MeDIP-seq). Transcriptome data were generated by RNA-seq. ChIP-seq analysis of H3K4me3, H3K27me3 and H3K27me1 enrichment profiles and MeDIP-seq analysis of 5mC enrichment profiles in 2 biological replicates. RNA-seq analysis of mRNA levels in 1 biological replicate.

2015-02-03 | E-GEOD-54727 | biostudies-arrayexpress

Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabis alpina

2015-02-03 | E-GEOD-54560 | biostudies-arrayexpress

Genome-wide profiling of H3K27me1 and 5mC enrichment in young leaves of Arabidopsis thaliana

2015-02-03 | GSE54894 | GEO

Genome-wide profiling of H3K27me1 and 5mC enrichment in young leaves of Arabidopsis thaliana

Project description:Chromatin, DNA and RNA were extracted from young A. thaliana primary stem leaves. Chromatin and DNA methylation immunoprecipitation experiments were performed using commercially available antibodies and analyzed by Illumina sequencing (ChIP-seq and MeDIP-seq). ChIP-seq analysis of H3K27me1 enrichment profiles and MeDIP-seq analysis of 5mC enrichment profiles in 2 biological replicates.

2015-02-03 | E-GEOD-54894 | biostudies-arrayexpress

Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabidopsis thaliana, Arabis alpina and Arabidopsis lyrata.

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2015-02-03 | E-GEOD-54728 | biostudies-arrayexpress

Root and rosette leaves transcriptome of Arabidopsis Col-0 and nrt1.5 mutant

Project description:Differentially regulated genes in rosette leaves and roots of hydroponically grown Arabidopsis thaliana Col-0 and nrt1.5-5 mutant plants were identified by microarray analyses.

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Gene expression in CAF-1 leaves

Project description:Chromatin assembly factor CAF-1 is conserved in all eukaryotes. In contrast to animals, plant CAF-1 is viable. Here we probe effects of loss of CAF-1 on the transcriptome of non-diving cells. Fully expanded rosette leaf 6 was collected from 10 35-d-old plants grown in short day photoperiods of wild type Col and CAF-1 mutants fas2-4 were used for RNA extraction.

2015-11-02 | E-MTAB-2376 | biostudies-arrayexpress

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