Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Involvement of viral miRNA in the regulation of antiviral apoptosis in shrimp

ABSTRACT: In this study, the viral miRNAs from white spot syndrome virus (WSSV) were characterized in shrimp in vivo. On the basis of our previous study and small RNA sequencing in this study, a total of 89 putative WSSV miRNAs were identified. As revealed by miRNA microarray analysis, the expressions of viral miRNAs were tissue-specific in vivo.

ORGANISM(S): Penaeus japonicus Shrimp white spot syndrome virus

PROVIDER: GSE53900 | GEO | 2014/01/09

SECONDARY ACCESSION(S): PRJNA233663

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Involvement of viral miRNA in the regulation of antiviral apoptosis in shrimp

Project description:In this study, the viral miRNAs from white spot syndrome virus (WSSV) were characterized in shrimp in vivo. On the basis of our previous study and small RNA sequencing in this study, a total of 89 putative WSSV miRNAs were identified. As revealed by miRNA microarray analysis, the expressions of viral miRNAs were tissue-specific in vivo. In this study, the viral miRNAs from white spot syndrome virus (WSSV) were characterized in shrimp in vivo. On the basis of our previous study and small RNA sequencing in this study, a total of 89 putative WSSV miRNAs were identified. As revealed by miRNA microarray analysis and Northern blots, the expressions of viral miRNAs were tissue-specific in vivo. Therefore, our study presented the first report on the in vivo molecular events of viral miRNA in the antiviral apoptosis.

2014-01-09 | E-GEOD-53900 | biostudies-arrayexpress

Profiling of WSSV infection in hepatopancreas of shrimp

Project description:Profiles of gene expression in hepatopancreas isolated from shrimp experimentally infected with White Spot Syndrome Virus were compared to those of un-infected controls Keywords: response to viral disease Two groups of eight shrimp were compared in terms of hepatopancreas gene expression, 40 hours after challenge with White Spot Syndrome Virus

2010-07-01 | E-GEOD-4955 | biostudies-arrayexpress

Profiling of WSSV infection in hepatopancreas of shrimp

2006-06-01 | GSE4955 | GEO

Microarray analysis of immunity in response to injection of non-specific long dsRNA in kuruma shrimp, Marsupenaeus japonicus

Project description:There is continuous interest in the anti-viral immune response of shrimp to prevent bacterial and viral infection. In this study, global expression analysis through microarray was conducted to gain insights about the mechanisms involved in the protection of non-specific double stranded RNA –injected shrimps against infectious diseases. Hemocytes were collected from different shrimp groups injected with PBS (Phosphate buffered saline), siGFP and dsGFP at 12 and 24 hour timepoints. Genes were clustered based on expression and treatment to highlight differences in expression related to the type of injection.

2015-02-19 | GSE61541 | GEO

Grass shrimp SAGE libraries

Project description:Adult male grass shrimp were exposed for 96 hours to LC50 concentrations of either Fipronil, Endosulfan, or Cadmium, as well as a Carrier Control exposure. RNA was extracted from whole-body homogenates using the RNABee kit. Tags were clustered to identify tags diagnostic of the different exposures. Keywords: SAGE, Grass shrimp, ecotoxicogenomics

2006-05-18 | GSE4853 | GEO

Grass shrimp SAGE libraries

2006-05-18 | E-GEOD-4853 | biostudies-arrayexpress

Shrimp transcriptome analysis after exposure to recombinant Vibrio parahaemolyticus PirA and PirB toxins

Project description:Vibrio parahaemolyticus is a Gram-negative bacterium commonly found in marine and estuarine environments. Acute hepatopancreatic necrosis disease (AHPND) caused by this bacterium is an ongoing problem among shrimp farming industries. V. parahaemolyticus proteins PirA and PirB have been determined to be major virulence factors that induce AHPND. In this study, Pacific white shrimp (Litopenaeus vannamei) were challenged with recombinant PirA and PirB by a reverse gavage method and then at 30 m, 1, 2, 4, and 6 h time points, the hepatopancreas of five individual shrimp were removed and placed into RNA later. We conducted RNA sequencing of the hepatopancreas samples from a no PirA/B control (n = 5) and PirA/B-treated shrimp at the different time intervals (n=5). We evaluated the different gene expression patterns between the time groups to the control with a focus on identifying differences in innate immune function.

2023-05-05 | GSE200137 | GEO

Shrimp white spot syndrome virus

Project description:Shrimp white spot syndrome virus Genome sequencing and assembly

| PRJNA413204 | ENA

Shrimp

Project description:Shrimp aquaculture

| PRJEB33404 | ENA

The immune defense of shrimp gills through Marsupenaeus japonicus gill C-type lectin (MjGCTL)

Project description:To present, the only known inv*olvement of the gills in the immune response of shrimp is solely assisting the hemocytes in filtering out the harmful factors. This global expression of novel genes revealed several immune-related genes specifically expressed in high amounts only in gills. This data provide new insights on the immune defense of shrimp.

2019-08-08 | GSE105787 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data