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Affymetrix of DC's from wildtype B6, CIITA-/-, and Iab-/- mice

ABSTRACT: Triplicates preparations of RNA from day 10 DC's. Experiment is described in Wong et al 2003 Nat. Immunol. Keywords: equivalent probe

ORGANISM(S): Mus musculus

PROVIDER: GSE557 | GEO | 2003/07/25

SECONDARY ACCESSION(S): PRJNA85319

REPOSITORIES: GEO

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Transcription profiling of mouse dendritic cells from wild type, CIITA-/- and I-A beta -/- strains representing CIITA-deficient, MHC class II-deficient and control mice

Project description:Triplicates preparations of RNA from day 10 DC's. Experiment is described in Wong et al 2003 Nat. Immunol.

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2008-06-13 | E-GEOD-5151 | biostudies-arrayexpress

Transcription profiling of mouse transgenic tumors driven by Her or Ras

Project description:previously published mouse data; Pubmed IDS: 12754511, 12839964 Experiment Overall Design: see Black, EP, et.al., Cancer Res. 2003 Jul 1;63(13):3716-23 and Huang, E., et.al. Nat Genet. 2003 Jun;34(2):226-30.

2008-06-12 | E-GEOD-3158 | biostudies-arrayexpress

Homo sapiens

Project description:Wong Cervical Adenocarcinoma Exome

| PRJNA222625 | ENA

CIITA

Project description:CIITA

| PRJEB5958 | ENA

Whole Genome Study for De Novo Mutation Rates

Project description:<p>Germline mutations are the source of evolution and contribute substantially to many health-related processes. In this study, we use whole genome deep sequencing data from parents-offspring trios to examine the de novo point mutations (DNMs) in the offspring.</p> <p>We studied correlation between parental ages with de novo mutation rates. This study is published in Wong WS, Solomon BD, Bodian DL, Kothiyal P, Eley G, Huddleston KC, Baker R, Thach DC, Iyer RK, Vockley JG, Niederhuber JE. New observations on maternal age effect on germline de novo mutations. Nat Commun. 2016 Jan 19;7:10486 (PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/26781218" target="_blank">26781218</a>. Also, we studied differences in molecular signatures in paternal versus maternal origin of de novo mutations. This study is published in Jakob M. Goldmann, Wendy S.W. Wong, Michele Pinelli, Terry Farrah, Dale Bodian, Anna B. Stittrich, Gustavo Glusman, Lisenka E.L.M. Vissers, Alexander Hoischen, Jared C. Roach, Joseph G. Vockley, Joris A. Veltman, Benjamin D. Solomon, Christian Gilissen, John E. Niederhuber. Parent-of-origin specific signatures of de novo mutations. Nat Genet. 2016 Aug;48(8):935-9, PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/27322544" target="_blank">27322544</a>.</p>

| phs001055 | dbGaP

CIITA

Project description:Creation of comprehensive CIITA and RFX5 ChIP-Seq profiles in primary B cells and monocytes

2014-10-08 | E-MTAB-2424 | biostudies-arrayexpress